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B4DR87 (B4DR87_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

cDNA FLJ59393, highly similar to Procollagen-lysine,2-oxoglutarate5-dioxygenase 1 (EC 1.14.11.4) EMBL BAG61199.1

cDNA, FLJ79184, highly similar to Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 (EC 1.14.11.4) EMBL BAH14656.1
Gene names
Name:PLOD1 Ensembl ENSP00000365548
OrganismHomo sapiens (Human) [Reference proteome] EMBL BAG61199.1
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length774 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
B4DR87 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 27DBE64A45B2A163

FASTA77488,273
        10         20         30         40         50         60 
MRPLLLLALL GWLLLAEAKG DAKPEAPCCQ EGLRAGGSGS LHLGRDFTVL AGARGSPSPS 

        70         80         90        100        110        120 
VSSIPRFWIP GSDNLLVLTV ATKETEGFRR FKRSAQFFNY KIQALGLGED WNVEKGTSAG 

       130        140        150        160        170        180 
GGQKVRLLKK ALEKHADKED LVILFADSYD VLFASGPREL LKKFRQARSQ VVFSAEELIY 

       190        200        210        220        230        240 
PDRRLETKYP VVSDGKRFLG SGGFIGYAPN LSKLVAEWEG QDSDSDQLFY TKIFLDPEKR 

       250        260        270        280        290        300 
EQINITLDHR CRIFQNLDGA LDEVVLKFEM GHVRARNLAY DTLPVLIHGN GPTKLQLNYL 

       310        320        330        340        350        360 
GNYIPRFWTF ETGCTVCDEG LRSLKGIGDE ALPTVLVGVF IEQPTPFVSL FFQRLLRLHY 

       370        380        390        400        410        420 
PQKHMRLFIH NHEQHHKAQV EEFLAQHGSE YQSVKLVGPE VRMANADARN MGADLCRQDR 

       430        440        450        460        470        480 
SCTYYFSVDA DVALTEPNSL RLLIQQNKNV IAPLMTRHGR LWSNFWGALS ADGYYARSED 

       490        500        510        520        530        540 
YVDIVQGRRV GVWNVPYISN IYLIKGSALR GELQSSDLFH HSKLDPDMAF CANIRQQDVF 

       550        560        570        580        590        600 
MFLTNRHTLG HLLSLDSYRT THLHNDLWEV FSNPEDWKEK YIHQNYTKAL AGKLVETPCP 

       610        620        630        640        650        660 
DVYWFPIFTE VACDELVEEM EHFGQWSLGN NKDNRIQGGY ENVPTIDIHM NQIGFEREWH 

       670        680        690        700        710        720 
KFLLEYIAPM TEKLYPGYYT RAQFDLAFVV RYKPDEQPSL MPHHDASTFT INIALNRVGV 

       730        740        750        760        770 
DYEGGGCRFL RYNCSIRAPR KGWTLMHPGR LTHYHEGLPT TRGTRYIAVS FVDP 

« Hide

References

« Hide 'large scale' references
[1]"The DNA sequence and biological annotation of human chromosome 1."
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. expand/collapse author list , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S., McLaren S., Milne S., Mistry S., Moore M.J., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R., Banerjee R., Bryant S.P., Burford D.C., Burrill W.D., Clegg S.M., Dhami P., Dovey O., Faulkner L.M., Gribble S.M., Langford C.F., Pandian R.D., Porter K.M., Prigmore E.
Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"NEDO human cDNA sequencing project focused on splicing variants."
Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T. expand/collapse author list , Sugano S., Nomura N., Isogai T.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"NEDO human cDNA sequencing project."
Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T. expand/collapse author list , Sugano S., Nomura N., Isogai T.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL096840 Genomic DNA. No translation available.
AK299150 mRNA. Translation: BAG61199.1.
AK316285 mRNA. Translation: BAH14656.1.
UniGeneHs.75093.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000376369; ENSP00000365548; ENSG00000083444.
KEGGhsa:5351.
UCSCuc010obb.2. human.

Organism-specific databases

CTD5351.
HGNCHGNC:9081. PLOD1.
GenAtlasSearch...

Phylogenomic databases

HOGENOMHOG000231099.
HOVERGENHBG053618.
KOK00473.
OMAKFEMGHV.

Family and domain databases

InterProIPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view]
PfamPF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view]
SMARTSM00702. P4Hc. 1 hit.
[Graphical view]
PROSITEPS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSPLOD1. human.
GenomeRNAi5351.
NextBio35474324.

Entry information

Entry nameB4DR87_HUMAN
AccessionPrimary (citable) accession number: B4DR87
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 16, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.