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B4DR87

- B4DR87_HUMAN

UniProt

B4DR87 - B4DR87_HUMAN

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Protein
Submitted name: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Gene
PLOD1
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. L-ascorbic acid binding Source: InterPro
  2. iron ion binding Source: InterPro
  3. procollagen-lysine 5-dioxygenase activity Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DioxygenaseImported, Oxidoreductase

Names & Taxonomyi

Protein namesi
Submitted name:
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1Imported
Submitted name:
cDNA FLJ59393, highly similar to Procollagen-lysine,2-oxoglutarate5-dioxygenase 1 (EC 1.14.11.4)Imported
Submitted name:
cDNA, FLJ79184, highly similar to Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 (EC 1.14.11.4)Imported
Gene namesi
Name:PLOD1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:9081. PLOD1.

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
  2. endoplasmic reticulum Source: InterPro
Complete GO annotation...

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

HOGENOMiHOG000231099.
HOVERGENiHBG053618.
OMAiKFEMGHV.

Family and domain databases

InterProiIPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view]
PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view]
SMARTiSM00702. P4Hc. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.
PROSITEiPS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DR87-1 [UniParc]FASTAAdd to Basket

« Hide

MRPLLLLALL GWLLLAEAKG DAKPEAPCCQ EGLRAGGSGS LHLGRDFTVL    50
AGARGSPSPS VSSIPRFWIP GSDNLLVLTV ATKETEGFRR FKRSAQFFNY 100
KIQALGLGED WNVEKGTSAG GGQKVRLLKK ALEKHADKED LVILFADSYD 150
VLFASGPREL LKKFRQARSQ VVFSAEELIY PDRRLETKYP VVSDGKRFLG 200
SGGFIGYAPN LSKLVAEWEG QDSDSDQLFY TKIFLDPEKR EQINITLDHR 250
CRIFQNLDGA LDEVVLKFEM GHVRARNLAY DTLPVLIHGN GPTKLQLNYL 300
GNYIPRFWTF ETGCTVCDEG LRSLKGIGDE ALPTVLVGVF IEQPTPFVSL 350
FFQRLLRLHY PQKHMRLFIH NHEQHHKAQV EEFLAQHGSE YQSVKLVGPE 400
VRMANADARN MGADLCRQDR SCTYYFSVDA DVALTEPNSL RLLIQQNKNV 450
IAPLMTRHGR LWSNFWGALS ADGYYARSED YVDIVQGRRV GVWNVPYISN 500
IYLIKGSALR GELQSSDLFH HSKLDPDMAF CANIRQQDVF MFLTNRHTLG 550
HLLSLDSYRT THLHNDLWEV FSNPEDWKEK YIHQNYTKAL AGKLVETPCP 600
DVYWFPIFTE VACDELVEEM EHFGQWSLGN NKDNRIQGGY ENVPTIDIHM 650
NQIGFEREWH KFLLEYIAPM TEKLYPGYYT RAQFDLAFVV RYKPDEQPSL 700
MPHHDASTFT INIALNRVGV DYEGGGCRFL RYNCSIRAPR KGWTLMHPGR 750
LTHYHEGLPT TRGTRYIAVS FVDP 774
Length:774
Mass (Da):88,273
Last modified:September 23, 2008 - v1
Checksum:i27DBE64A45B2A163
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL096840 Genomic DNA. No translation available.
AK299150 mRNA. Translation: BAG61199.1.
AK316285 mRNA. Translation: BAH14656.1.
UniGeneiHs.75093.

Genome annotation databases

EnsembliENST00000376369; ENSP00000365548; ENSG00000083444.
UCSCiuc010obb.2. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL096840 Genomic DNA. No translation available.
AK299150 mRNA. Translation: BAG61199.1 .
AK316285 mRNA. Translation: BAH14656.1 .
UniGenei Hs.75093.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000376369 ; ENSP00000365548 ; ENSG00000083444 .
UCSCi uc010obb.2. human.

Organism-specific databases

HGNCi HGNC:9081. PLOD1.
GenAtlasi Search...

Phylogenomic databases

HOGENOMi HOG000231099.
HOVERGENi HBG053618.
OMAi KFEMGHV.

Miscellaneous databases

ChiTaRSi PLOD1. human.
GenomeRNAii 5351.
NextBioi 35474324.

Family and domain databases

InterProi IPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view ]
Pfami PF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view ]
SMARTi SM00702. P4Hc. 1 hit.
[Graphical view ]
SUPFAMi SSF53448. SSF53448. 1 hit.
PROSITEi PS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S., McLaren S., Milne S., Mistry S., Moore M.J., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R., Banerjee R., Bryant S.P., Burford D.C., Burrill W.D., Clegg S.M., Dhami P., Dovey O., Faulkner L.M., Gribble S.M., Langford C.F., Pandian R.D., Porter K.M., Prigmore E.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  5. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiB4DR87_HUMAN
AccessioniPrimary (citable) accession number: B4DR87
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: September 3, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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