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Protein
Submitted name:

cDNA FLJ55990, highly similar to LIM domain and actin-binding protein 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ55990, highly similar to LIM domain and actin-binding protein 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

PTM / Processingi

Proteomic databases

PaxDbiB4DN52.
PeptideAtlasiB4DN52.
PRIDEiB4DN52.

Interactioni

Protein-protein interaction databases

IntActiB4DN52. 1 interaction.
STRINGi9606.ENSP00000378400.

Structurei

3D structure databases

ProteinModelPortaliB4DN52.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini307 – 36761LIM zinc-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 LIM zinc-binding domain.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotation

Phylogenomic databases

eggNOGiENOG410ITI7. Eukaryota.
ENOG41102B0. LUCA.
HOGENOMiHOG000059621.
HOVERGENiHBG051492.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR028740. EPLIN.
IPR001781. Znf_LIM.
[Graphical view]
PANTHERiPTHR24206:SF34. PTHR24206:SF34. 1 hit.
PfamiPF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DN52-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWQGCNCSQL SETAVDQEQL GVLTFILQRT TCLNVSADQE EQIHPRSRLR
60 70 80 90 100
SPPEALVQGR YPHIKDGEDL KDHSTESKKM ENCLGESRHE VEKSEISENT
110 120 130 140 150
DASGKIEKYN VPLNRLKMMF EKGEPTQTKI LRAQSRSASG RKISENSYSL
160 170 180 190 200
DDLEIGPGQL SSSTFDSEKN ESRRNLELPR LSETSIKDRM AKYQAAVSKQ
210 220 230 240 250
SSSTNYTNEL KASGGEIKIH KMEQKENVPP GPEVCITHQE GEKISANENS
260 270 280 290 300
LAVRSTPAED DSRDSQVKSE VQQPVHPKPL SPDSRASSLS ESSPPKAMKK
310 320 330 340 350
FQAPARETCV ECQKTVYPME RLLANQQVFH ISCFRCSYCN NKLSLGTYAS
360 370 380 390 400
LHGRIYCKPH FNQLFKSKGN YDEGFGHRPH KDLWASKNEN EEILERPAQL
410 420 430 440 450
ANARETPHSP GVEDAPIAKV GVLAASMEAK ASSQQEKEDK PAETKKLRIA
460 470 480 490 500
WPPPTELGSS GSALEEGIKM SKPKWPPEDE ISKPEVPEDV DLDLKKLRRS
510 520 530 540 550
SSLKERSRPF TVAASFQSTS VKSPKTVSPP IRKGWSMSEQ SEESVGGRVA
560 570 580 590 600
ERKQVENAKA SKKNGNVGKT TWQNKESKGE TGKRSKEGHS LEMENENLVE
610 620 630 640 650
NGADSDEDDN SFLKQQSPQE PKSLNWSSFV DNTFAEEFTT QNQKSQDVEL
660 670
WEGEVVKELS VEEQIKRNRY YDEDEDEE
Length:678
Mass (Da):76,080
Last modified:September 23, 2008 - v1
Checksum:iB7A2CDFFFC680190
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK297766 mRNA. Translation: BAG60114.1.
UniGeneiHs.525419.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK297766 mRNA. Translation: BAG60114.1.
UniGeneiHs.525419.

3D structure databases

ProteinModelPortaliB4DN52.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiB4DN52. 1 interaction.
STRINGi9606.ENSP00000378400.

Proteomic databases

PaxDbiB4DN52.
PeptideAtlasiB4DN52.
PRIDEiB4DN52.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410ITI7. Eukaryota.
ENOG41102B0. LUCA.
HOGENOMiHOG000059621.
HOVERGENiHBG051492.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR028740. EPLIN.
IPR001781. Znf_LIM.
[Graphical view]
PANTHERiPTHR24206:SF34. PTHR24206:SF34. 1 hit.
PfamiPF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB4DN52_HUMAN
AccessioniPrimary (citable) accession number: B4DN52
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: September 7, 2016
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.