Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B4DKV0 (B4DKV0_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

Uncharacterized protein Ensembl ENSP00000451145

cDNA FLJ58508, highly similar to Transcription factor SOX-7 EMBL BAG59312.1
Gene names
Name:SOX7 Ensembl ENSP00000452017
OrganismHomo sapiens (Human) [Reference proteome] EMBL BAG59312.1
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length440 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains G-patch domain. SAAS SAAS000467

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionnucleic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B4DKV0 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 65DD815F859467D3

FASTA44048,522
        10         20         30         40         50         60 
MSMLAERRRK QKWAVDPQNT AWSNDDSKFG QRMLEKMGWS KGKGLGAQEQ GATDHIKVQV 

        70         80         90        100        110        120 
KNNHLGLGAT INNEDNWIAH QDDFNQLLAE LNTCHGQETT DSSDKKEKKS FSLEEKSKIS 

       130        140        150        160        170        180 
KNRVHYMKFT KGKSWKALTL SQKRPYVDEA ERLRLQHMQD YPNYKYRPRR KKQAKRLCKR 

       190        200        210        220        230        240 
VDPGFLLSSL SRDQNALPEK RSGSRGALGE KEDRGEYSPG TALPSLRGCY HEGPAGGGGG 

       250        260        270        280        290        300 
GTPSSVDTYP YGLPTPPEMS PLDVLEPEQT FFSSPCQEEH GHPRRIPHLP GHPYSPEYAP 

       310        320        330        340        350        360 
SPLHCSHPLG SLALGQSPGV SMMSPVPGCP PSPAYYSPAT YHPLHSNLQA HLGQLSPPPE 

       370        380        390        400        410        420 
HPGFDALDQL SQVELLGDMD RNEFDQYLNT PGHPDSATGA MALSGHVPVS QVTPTGPTET 

       430        440 
SLISVLADAT ATYYNSYSVS 

« Hide

References

« Hide 'large scale' references
[1]"DNA sequence and analysis of human chromosome 8."
Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S., Asakawa T. expand/collapse author list , Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Glockner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P., Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H., Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B., O'Neill K., Parker S.C., Polley A., Raymond C.K., Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N., Lander E.S.
Nature 439:331-335(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"NEDO human cDNA sequencing project focused on splicing variants."
Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T. expand/collapse author list , Sugano S., Nomura N., Isogai T.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Tongue EMBL BAG59312.1.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
[4]Ensembl
Submitted (NOV-2012) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC011008 Genomic DNA. No translation available.
AC105001 Genomic DNA. No translation available.
AK296724 mRNA. Translation: BAG59312.1.

3D structure databases

ProteinModelPortalB4DKV0.
SMRB4DKV0. Positions 132-170.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000553390; ENSP00000452017; ENSG00000171056.
ENST00000554914; ENSP00000451145; ENSG00000258724.
UCSCuc011kwz.2. human.

Organism-specific databases

HGNCHGNC:18196. SOX7.
GenAtlasSearch...

Phylogenomic databases

HOGENOMHOG000069999.
HOVERGENHBG000517.
OMAECPALEA.
PhylomeDBB4DKV0.
TreeFamTF321918.

Family and domain databases

Gene3D1.10.30.10. 1 hit.
InterProIPR000467. G_patch_dom.
IPR009071. HMG_box_dom.
IPR021934. Sox_C_TAD.
[Graphical view]
PfamPF01585. G-patch. 1 hit.
PF00505. HMG_box. 1 hit.
PF12067. Sox_C_TAD. 1 hit.
[Graphical view]
SMARTSM00443. G_patch. 1 hit.
[Graphical view]
SUPFAMSSF47095. SSF47095. 1 hit.
PROSITEPS50174. G_PATCH. 1 hit.
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSSOX7. human.
NextBio35472877.

Entry information

Entry nameB4DKV0_HUMAN
AccessionPrimary (citable) accession number: B4DKV0
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: June 11, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.