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B4DKV0

- B4DKV0_HUMAN

UniProt

B4DKV0 - B4DKV0_HUMAN

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Protein
Submitted name: Transcription factor SOX-7
Gene
SOX7
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor SOX-7Imported
Submitted name:
Uncharacterized proteinImported
Submitted name:
cDNA FLJ58508, highly similar to Transcription factor SOX-7Imported
Gene namesi
Name:SOX7Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 8

Organism-specific databases

HGNCiHGNC:18196. SOX7.

Structurei

3D structure databases

ProteinModelPortaliB4DKV0.
SMRiB4DKV0. Positions 132-170.

Family & Domainsi

Sequence similaritiesi

Contains G-patch domain.SAAS annotations

Phylogenomic databases

HOGENOMiHOG000069999.
HOVERGENiHBG000517.
OMAiECPALEA.
PhylomeDBiB4DKV0.
TreeFamiTF321918.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR000467. G_patch_dom.
IPR009071. HMG_box_dom.
IPR021934. Sox_C_TAD.
[Graphical view]
PfamiPF01585. G-patch. 1 hit.
PF00505. HMG_box. 1 hit.
PF12067. Sox_C_TAD. 1 hit.
[Graphical view]
SMARTiSM00443. G_patch. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50174. G_PATCH. 1 hit.
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DKV0-1 [UniParc]FASTAAdd to Basket

« Hide

MSMLAERRRK QKWAVDPQNT AWSNDDSKFG QRMLEKMGWS KGKGLGAQEQ    50
GATDHIKVQV KNNHLGLGAT INNEDNWIAH QDDFNQLLAE LNTCHGQETT 100
DSSDKKEKKS FSLEEKSKIS KNRVHYMKFT KGKSWKALTL SQKRPYVDEA 150
ERLRLQHMQD YPNYKYRPRR KKQAKRLCKR VDPGFLLSSL SRDQNALPEK 200
RSGSRGALGE KEDRGEYSPG TALPSLRGCY HEGPAGGGGG GTPSSVDTYP 250
YGLPTPPEMS PLDVLEPEQT FFSSPCQEEH GHPRRIPHLP GHPYSPEYAP 300
SPLHCSHPLG SLALGQSPGV SMMSPVPGCP PSPAYYSPAT YHPLHSNLQA 350
HLGQLSPPPE HPGFDALDQL SQVELLGDMD RNEFDQYLNT PGHPDSATGA 400
MALSGHVPVS QVTPTGPTET SLISVLADAT ATYYNSYSVS 440
Length:440
Mass (Da):48,522
Last modified:September 23, 2008 - v1
Checksum:i65DD815F859467D3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC011008 Genomic DNA. No translation available.
AC105001 Genomic DNA. No translation available.
AK296724 mRNA. Translation: BAG59312.1.

Genome annotation databases

EnsembliENST00000553390; ENSP00000452017; ENSG00000171056.
ENST00000554914; ENSP00000451145; ENSG00000258724.
UCSCiuc011kwz.2. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC011008 Genomic DNA. No translation available.
AC105001 Genomic DNA. No translation available.
AK296724 mRNA. Translation: BAG59312.1 .

3D structure databases

ProteinModelPortali B4DKV0.
SMRi B4DKV0. Positions 132-170.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000553390 ; ENSP00000452017 ; ENSG00000171056 .
ENST00000554914 ; ENSP00000451145 ; ENSG00000258724 .
UCSCi uc011kwz.2. human.

Organism-specific databases

HGNCi HGNC:18196. SOX7.
GenAtlasi Search...

Phylogenomic databases

HOGENOMi HOG000069999.
HOVERGENi HBG000517.
OMAi ECPALEA.
PhylomeDBi B4DKV0.
TreeFami TF321918.

Miscellaneous databases

ChiTaRSi SOX7. human.
NextBioi 35472877.

Family and domain databases

Gene3Di 1.10.30.10. 1 hit.
InterProi IPR000467. G_patch_dom.
IPR009071. HMG_box_dom.
IPR021934. Sox_C_TAD.
[Graphical view ]
Pfami PF01585. G-patch. 1 hit.
PF00505. HMG_box. 1 hit.
PF12067. Sox_C_TAD. 1 hit.
[Graphical view ]
SMARTi SM00443. G_patch. 1 hit.
[Graphical view ]
SUPFAMi SSF47095. SSF47095. 1 hit.
PROSITEi PS50174. G_PATCH. 1 hit.
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "DNA sequence and analysis of human chromosome 8."
    Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S., Asakawa T.
    , Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Glockner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P., Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H., Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B., O'Neill K., Parker S.C., Polley A., Raymond C.K., Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N., Lander E.S.
    Nature 439:331-335(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: TongueImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
  4. Ensembl
    Submitted (NOV-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiB4DKV0_HUMAN
AccessioniPrimary (citable) accession number: B4DKV0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: June 11, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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