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Protein
Submitted name:

Optic atrophy 3 protein

Gene

OPA3

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Optic atrophy 3 proteinImported
Submitted name:
cDNA FLJ57883, highly similar to Optic atrophy 3 proteinImported
Gene namesi
Name:OPA3Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 19

Organism-specific databases

HGNCiHGNC:8142. OPA3.

PTM / Processingi

Proteomic databases

PRIDEiB4DK77.

Expressioni

Gene expression databases

BgeeiB4DK77.
ExpressionAtlasiB4DK77. baseline and differential.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000009795.
HOVERGENiHBG019109.

Family and domain databases

InterProiIPR010754. OPA3-like.
[Graphical view]
PANTHERiPTHR12499. PTHR12499. 1 hit.
PfamiPF07047. OPA3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DK77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTKMRIMGF RGTVIKPLNE EAAAELGAEL LGEATIFIVG GGCLVLEYWR
60 70 80 90 100
HQAQQRHKEE EQRAAWNALR DEVGHLALAL EALQAQVQAA PPQGALEELR
110 120
TELQEVRAQL CNPGRSASHA VPASKK
Length:126
Mass (Da):13,862
Last modified:September 23, 2008 - v1
Checksum:i9180091CAB07201B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006117 Genomic DNA. No translation available.
AC006261 Genomic DNA. No translation available.
AC011480 Genomic DNA. No translation available.
AK296429 mRNA. Translation: BAG59089.1.
RefSeqiXP_005259335.1. XM_005259278.2.
XP_006723466.1. XM_006723403.2.
UniGeneiHs.466945.
Hs.723713.

Genome annotation databases

EnsembliENST00000544371; ENSP00000442839; ENSG00000125741.
GeneIDi80207.
KEGGihsa:80207.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006117 Genomic DNA. No translation available.
AC006261 Genomic DNA. No translation available.
AC011480 Genomic DNA. No translation available.
AK296429 mRNA. Translation: BAG59089.1.
RefSeqiXP_005259335.1. XM_005259278.2.
XP_006723466.1. XM_006723403.2.
UniGeneiHs.466945.
Hs.723713.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiB4DK77.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000544371; ENSP00000442839; ENSG00000125741.
GeneIDi80207.
KEGGihsa:80207.

Organism-specific databases

CTDi80207.
HGNCiHGNC:8142. OPA3.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00390000009795.
HOVERGENiHBG019109.

Miscellaneous databases

ChiTaRSiOPA3. human.
GenomeRNAii80207.
NextBioi35472720.

Gene expression databases

BgeeiB4DK77.
ExpressionAtlasiB4DK77. baseline and differential.

Family and domain databases

InterProiIPR010754. OPA3-like.
[Graphical view]
PANTHERiPTHR12499. PTHR12499. 1 hit.
PfamiPF07047. OPA3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence and biology of human chromosome 19."
    Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V.
    , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
    Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: ThalamusImported.
  3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
  5. "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome."
    Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.
    J. Proteomics 96:253-262(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiB4DK77_HUMAN
AccessioniPrimary (citable) accession number: B4DK77
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 29, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.