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Protein
Submitted name:

cDNA FLJ54033, highly similar to Spliceosome RNA helicase Bat1 (EC 3.6.1.-)

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

HelicaseImported, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ54033, highly similar to Spliceosome RNA helicase Bat1 (EC 3.6.1.-)Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

PTM / Processingi

Proteomic databases

PeptideAtlasiB4DIJ6.
PRIDEiB4DIJ6.

Expressioni

Gene expression databases

BgeeiB4DIJ6.

Structurei

3D structure databases

ProteinModelPortaliB4DIJ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 202183Helicase ATP-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

HOVERGENiHBG102589.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DIJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWTMSSWTMK MMRWRQQLGE MGLRPLPRRM SRAPMSPSTA LAFVTSCSSQ
60 70 80 90 100
SCSGPLSTVA LSIRQKVSVL VMCHTRELAF QISKEYERFS KYMPNVKVAV
110 120 130 140 150
FFGGLSIKKD EEVLKKNCPH IVVGTPGRIL ALARNKSLNL KHIKHFILDE
160 170 180 190 200
CDKMLEQLDM RRDVQEIFRM TPHEKQVMMF SATLSKEIRP VCRKFMQDVN
210 220 230 240
TLLPSLPPLP ARCLLPFLAL FLRLPCHSSA KKAACAQLGV MTP
Length:243
Mass (Da):27,672
Last modified:September 23, 2008 - v1
Checksum:i5429DCADF2A80DBC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295634 mRNA. Translation: BAG58508.1.
UniGeneiHs.254042.
Hs.730849.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295634 mRNA. Translation: BAG58508.1.
UniGeneiHs.254042.
Hs.730849.

3D structure databases

ProteinModelPortaliB4DIJ6.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PeptideAtlasiB4DIJ6.
PRIDEiB4DIJ6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG102589.

Miscellaneous databases

ChiTaRSiDDX39B. human.

Gene expression databases

BgeeiB4DIJ6.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: HippocampusImported.

Entry informationi

Entry nameiB4DIJ6_HUMAN
AccessioniPrimary (citable) accession number: B4DIJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: July 6, 2016
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.