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Protein
Submitted name:

cDNA FLJ55972, highly similar to Methyl-CpG-binding domain protein 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ55972, highly similar to Methyl-CpG-binding domain protein 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiB4DI41.
PaxDbiB4DI41.
PeptideAtlasiB4DI41.

Expressioni

Gene expression databases

BgeeiB4DI41.
GenevisibleiB4DI41. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000405268.

Structurei

3D structure databases

ProteinModelPortaliB4DI41.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 9569MBD (methyl-CpG-binding)InterPro annotationAdd
BLAST
Domaini195 – 24248CXXC-typeInterPro annotationAdd
BLAST
Domaini243 – 28947CXXC-typeInterPro annotationAdd
BLAST
Domaini381 – 42949CXXC-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IIBG. Eukaryota.
ENOG4111S3X. LUCA.
HOGENOMiHOG000069958.
HOVERGENiHBG052416.
PhylomeDBiB4DI41.

Family and domain databases

Gene3Di3.30.890.10. 1 hit.
InterProiIPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR002857. Znf_CXXC.
[Graphical view]
PfamiPF01429. MBD. 1 hit.
PF02008. zf-CXXC. 3 hits.
[Graphical view]
SMARTiSM00391. MBD. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS50982. MBD. 1 hit.
PS51058. ZF_CXXC. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DI41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGFRLRTGR NAALNSDRLL LLPVASMAED WLDCPALGPG WKRREVFRKS
60 70 80 90 100
GATCGRSDTY YQSPTGDRIR SKVELTRYLG PACDLTLFDF KQGILCYPAP
110 120 130 140 150
KAHPVAVASK KRKKPSRPAK TRKRQVGPQS GEVRKEAPRD ETKADTDTAP
160 170 180 190 200
ASFPAPGCCE NCGISFSGDG TQRQRLKTLC KDCRAQRIAF NREQRMFKRV
210 220 230 240 250
GCGECAACQV TEDCGACSTC LLQLPHDVAS GLFCKCERRR CLRIVERSRG
260 270 280 290 300
CGVCRGCQTQ EDCGHCPICL RPPRPGLRRQ WKCVQRRCLR HLAHRLRRRH
310 320 330 340 350
QRCQRRTPLA VAPPTGKHAR RKGGCDSKMA ARRRPGAQPL PPPPPSQSPE
360 370 380 390 400
PTEPHPRALA PSPPAEFIYY CVDEDELQPY TNRRQNRKCG ACAACLRRMD
410 420 430 440 450
CGRCDFCCDK PKFGGSNQKR QKCRWRQCLQ FAMKRLLPSV WSESEDGAGS
460 470 480 490 500
PPPYRRRKRP SSARRHHLGP TLKPTLATRT AQPDHTQAPT KQEAGGGFVL
510 520 530 540 550
PPPGTDLVFL REGASSPVQV PGPVAASTEA LLQEAQCSGL SWVVALPQVK
560 570 580 590 600
QEKADTQDEW TPGTAVLTSP VLVPGCPSKA VDPGLPSVKQ EPPDPEEDKE
610 620 630 640 650
ENKDDSASKL APEEEAGGAG TPVITEIFSL GGTRFRDTAV WLPRSKDLKK

PGARKQ
Length:656
Mass (Da):72,398
Last modified:September 23, 2008 - v1
Checksum:i55C091585876E644
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295401 mRNA. Translation: BAG58353.1.
RefSeqiNP_001191066.1. NM_001204137.1.
NP_001191067.1. NM_001204138.1.
NP_001191069.1. NM_001204140.1.
UniGeneiHs.405610.

Genome annotation databases

GeneIDi4152.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295401 mRNA. Translation: BAG58353.1.
RefSeqiNP_001191066.1. NM_001204137.1.
NP_001191067.1. NM_001204138.1.
NP_001191069.1. NM_001204140.1.
UniGeneiHs.405610.

3D structure databases

ProteinModelPortaliB4DI41.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000405268.

Proteomic databases

EPDiB4DI41.
PaxDbiB4DI41.
PeptideAtlasiB4DI41.

Protocols and materials databases

DNASUi4152.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4152.

Organism-specific databases

CTDi4152.

Phylogenomic databases

eggNOGiENOG410IIBG. Eukaryota.
ENOG4111S3X. LUCA.
HOGENOMiHOG000069958.
HOVERGENiHBG052416.
PhylomeDBiB4DI41.

Miscellaneous databases

ChiTaRSiMBD1. human.
GenomeRNAii4152.

Gene expression databases

BgeeiB4DI41.
GenevisibleiB4DI41. HS.

Family and domain databases

Gene3Di3.30.890.10. 1 hit.
InterProiIPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR002857. Znf_CXXC.
[Graphical view]
PfamiPF01429. MBD. 1 hit.
PF02008. zf-CXXC. 3 hits.
[Graphical view]
SMARTiSM00391. MBD. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS50982. MBD. 1 hit.
PS51058. ZF_CXXC. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Corpus callosumImported.

Entry informationi

Entry nameiB4DI41_HUMAN
AccessioniPrimary (citable) accession number: B4DI41
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: July 6, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.