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Protein
Submitted name:

cDNA FLJ55972, highly similar to Methyl-CpG-binding domain protein 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri195 – 242CXXC-typePROSITE-ProRule annotationAdd BLAST48
Zinc fingeri243 – 289CXXC-typePROSITE-ProRule annotationAdd BLAST47
Zinc fingeri381 – 429CXXC-typePROSITE-ProRule annotationAdd BLAST49

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ55972, highly similar to Methyl-CpG-binding domain protein 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiB4DI41.
MaxQBiB4DI41.
PaxDbiB4DI41.
PRIDEiB4DI41.

Expressioni

Gene expression databases

GenevisibleiB4DI41. HS.

Structurei

3D structure databases

ProteinModelPortaliB4DI41.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 95MBDInterPro annotationAdd BLAST69
Domaini195 – 242CXXC-typeInterPro annotationAdd BLAST48
Domaini243 – 289CXXC-typeInterPro annotationAdd BLAST47
Domaini381 – 429CXXC-typeInterPro annotationAdd BLAST49

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri195 – 242CXXC-typePROSITE-ProRule annotationAdd BLAST48
Zinc fingeri243 – 289CXXC-typePROSITE-ProRule annotationAdd BLAST47
Zinc fingeri381 – 429CXXC-typePROSITE-ProRule annotationAdd BLAST49

Phylogenomic databases

eggNOGiENOG410IIBG. Eukaryota.
ENOG4111S3X. LUCA.
HOGENOMiHOG000069958.
HOVERGENiHBG052416.
PhylomeDBiB4DI41.

Family and domain databases

InterProiView protein in InterPro
IPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR002857. Znf_CXXC.
PfamiView protein in Pfam
PF01429. MBD. 1 hit.
PF02008. zf-CXXC. 3 hits.
SMARTiView protein in SMART
SM00391. MBD. 1 hit.
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiView protein in PROSITE
PS50982. MBD. 1 hit.
PS51058. ZF_CXXC. 3 hits.

Sequencei

Sequence statusi: Complete.

B4DI41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGFRLRTGR NAALNSDRLL LLPVASMAED WLDCPALGPG WKRREVFRKS
60 70 80 90 100
GATCGRSDTY YQSPTGDRIR SKVELTRYLG PACDLTLFDF KQGILCYPAP
110 120 130 140 150
KAHPVAVASK KRKKPSRPAK TRKRQVGPQS GEVRKEAPRD ETKADTDTAP
160 170 180 190 200
ASFPAPGCCE NCGISFSGDG TQRQRLKTLC KDCRAQRIAF NREQRMFKRV
210 220 230 240 250
GCGECAACQV TEDCGACSTC LLQLPHDVAS GLFCKCERRR CLRIVERSRG
260 270 280 290 300
CGVCRGCQTQ EDCGHCPICL RPPRPGLRRQ WKCVQRRCLR HLAHRLRRRH
310 320 330 340 350
QRCQRRTPLA VAPPTGKHAR RKGGCDSKMA ARRRPGAQPL PPPPPSQSPE
360 370 380 390 400
PTEPHPRALA PSPPAEFIYY CVDEDELQPY TNRRQNRKCG ACAACLRRMD
410 420 430 440 450
CGRCDFCCDK PKFGGSNQKR QKCRWRQCLQ FAMKRLLPSV WSESEDGAGS
460 470 480 490 500
PPPYRRRKRP SSARRHHLGP TLKPTLATRT AQPDHTQAPT KQEAGGGFVL
510 520 530 540 550
PPPGTDLVFL REGASSPVQV PGPVAASTEA LLQEAQCSGL SWVVALPQVK
560 570 580 590 600
QEKADTQDEW TPGTAVLTSP VLVPGCPSKA VDPGLPSVKQ EPPDPEEDKE
610 620 630 640 650
ENKDDSASKL APEEEAGGAG TPVITEIFSL GGTRFRDTAV WLPRSKDLKK

PGARKQ
Length:656
Mass (Da):72,398
Last modified:September 23, 2008 - v1
Checksum:i55C091585876E644
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295401 mRNA. Translation: BAG58353.1.
RefSeqiNP_001191066.1. NM_001204137.1.
NP_001191067.1. NM_001204138.1.
NP_001191069.1. NM_001204140.1.
UniGeneiHs.405610.

Genome annotation databases

GeneIDi4152.

Similar proteinsi

Entry informationi

Entry nameiB4DI41_HUMAN
AccessioniPrimary (citable) accession number: B4DI41
Entry historyiIntegrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: September 27, 2017
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.