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Protein

Nuclear factor 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ActivatorUniRule annotation

Keywords - Biological processi

DNA replicationUniRule annotation, Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear factor 1UniRule annotation
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiB4DHW2.
PeptideAtlasiB4DHW2.

Interactioni

Subunit structurei

Binds DNA as a homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi9606.ENSP00000380781.

Structurei

3D structure databases

ProteinModelPortaliB4DHW2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini9 – 202194CTF/NF-I DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the CTF/NF-I family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3663. Eukaryota.
ENOG410Y16G. LUCA.
HOGENOMiHOG000013028.
HOVERGENiHBG006561.

Family and domain databases

InterProiIPR000647. CTF/NFI.
IPR020604. CTF/NFI_DNA-bd-dom.
IPR019739. CTF/NFI_DNA-bd_CS.
IPR019548. CTF/NFI_DNA-bd_N.
IPR003619. MAD_homology1_Dwarfin-type.
[Graphical view]
PANTHERiPTHR11492. PTHR11492. 1 hit.
PfamiPF00859. CTF_NFI. 1 hit.
PF03165. MH1. 1 hit.
PF10524. NfI_DNAbd_pre-N. 1 hit.
[Graphical view]
SMARTiSM00523. DWA. 1 hit.
[Graphical view]
PROSITEiPS00349. CTF_NFI_1. 1 hit.
PS51080. CTF_NFI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DHW2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEMSWARQSL AGIPAACDEF HPFIEALLPH VRAFSYTWFN LQARKRKYFK
60 70 80 90 100
KHEKRMSKDE ERAVKDELLG EKPEIKQKWA SRLLAKLRKD IRPEFREDFV
110 120 130 140 150
LTITGKKPPC CVLSNPDQKG KIRRIDCLRQ ADKVWRLDLV MVILFKGIPL
160 170 180 190 200
ESTDGERLYK SPQCSNPGLC VQPHHIGVTI KELDLYLAYF VHTPESGQSD
210 220 230 240 250
SSNQQGDADI KPLPNGHLSF QDCFVTSGVW NVTELVRVSQ TPVATASGPN
260 270 280 290 300
FSLADLESPS YYNINQVTLG RRSITSPPST STTKRPKSID DSEMESPVDD
310 320 330 340 350
VFYPGTGRSP AAGSSQSSGW PNDVDAGPAS LKKSGKLDFC SALSSQGSSP
360 370 380 390 400
RMAFTHHPLP VLAGVRPGSP RATASALHFP STSIIQQSSP YFTHPTIRYH
410 420 430 440 450
HHHGQDSLKE FVQFVCSDGS GQATGQPNGS GQGKVPGSFL LPPPPPVARP
460 470 480 490 500
VPLPMPDSKS TSTAPDGAAL TPPSPSFATT GASSANRFVS IGPRDGNFLN
510
IPQQSQSWFL
Length:510
Mass (Da):55,815
Last modified:September 23, 2008 - v1
Checksum:i650EB017A1F99EB3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295290 mRNA. Translation: BAG58274.1.
RefSeqiNP_001257972.1. NM_001271043.2.
UniGeneiHs.257970.

Genome annotation databases

GeneIDi4784.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK295290 mRNA. Translation: BAG58274.1.
RefSeqiNP_001257972.1. NM_001271043.2.
UniGeneiHs.257970.

3D structure databases

ProteinModelPortaliB4DHW2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000380781.

Proteomic databases

PaxDbiB4DHW2.
PeptideAtlasiB4DHW2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4784.

Organism-specific databases

CTDi4784.

Phylogenomic databases

eggNOGiKOG3663. Eukaryota.
ENOG410Y16G. LUCA.
HOGENOMiHOG000013028.
HOVERGENiHBG006561.

Miscellaneous databases

GenomeRNAii4784.

Family and domain databases

InterProiIPR000647. CTF/NFI.
IPR020604. CTF/NFI_DNA-bd-dom.
IPR019739. CTF/NFI_DNA-bd_CS.
IPR019548. CTF/NFI_DNA-bd_N.
IPR003619. MAD_homology1_Dwarfin-type.
[Graphical view]
PANTHERiPTHR11492. PTHR11492. 1 hit.
PfamiPF00859. CTF_NFI. 1 hit.
PF03165. MH1. 1 hit.
PF10524. NfI_DNAbd_pre-N. 1 hit.
[Graphical view]
SMARTiSM00523. DWA. 1 hit.
[Graphical view]
PROSITEiPS00349. CTF_NFI_1. 1 hit.
PS51080. CTF_NFI_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Caudate nucleusImported.

Entry informationi

Entry nameiB4DHW2_HUMAN
AccessioniPrimary (citable) accession number: B4DHW2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: July 6, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.