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Protein
Submitted name:

cDNA FLJ51800, highly similar to Peroxisome biogenesis factor 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. ATPase activity, coupled Source: InterPro
  2. ATP binding Source: UniProtKB-KW

GO - Biological processi

  1. protein targeting to peroxisome Source: InterPro
Complete GO annotation...

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ51800, highly similar to Peroxisome biogenesis factor 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

  1. peroxisomal membrane Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiB4DER6.

Expressioni

Gene expression databases

BgeeiB4DER6.
ExpressionAtlasiB4DER6. baseline and differential.

Family & Domainsi

Sequence similaritiesi

Belongs to the AAA ATPase family.UniRule annotation

Phylogenomic databases

HOVERGENiHBG008169.
KOiK13338.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR003960. ATPase_AAA_CS.
IPR027417. P-loop_NTPase.
IPR025653. Pex1.
[Graphical view]
PANTHERiPTHR23077:SF12. PTHR23077:SF12. 1 hit.
PfamiPF00004. AAA. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00674. AAA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DER6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKELQTKQL QSNTVGITES NENESEIPVD SSSVASLWTM IGSIFSFQSE
60 70 80 90 100
KKQETSWGLT EINAFKNMQS KVVPLDNIFR VCKSQPPSIY NASATSVFHK
110 120 130 140 150
HCAIHVFPWD QEYFDVEPSF TVTYGKLVKL LSPKQQQSKT KQNVLSPEKE
160 170 180 190 200
KQMSEPLDQK KIRSDHNEED EKACVLQVVW NGLEELNNAI KYTKNVEVLH
210 220 230 240 250
LGKVWIPDDL RKRLNIEMHA VVRITPVEVT PKIPRSLKLQ PRENLPKDIS
260 270 280 290 300
EEDIKTVFYS WLQQSTTTML PLVISEEEFI KLETKDGLKE FSLSIVHSWE
310 320 330 340 350
KEKDKNIFLL SPNLLQKTTI QVLLDPMVKE ENSEEIDFIL PFLKLSSLGG
360 370 380 390 400
VNSLGVSSLE HITHSLLGRP LSRQLMSLVA GLRNGALLLT GGKGSGKSTL
410 420 430 440 450
AKAICKEAFD KLDAHVERVD CKALRGKRLE NIQKTLEVAF SEAVWMQPSV
460 470 480 490 500
VLLDDLDLIA GLPAVPEHEH SPDAVQSQRL AHALNDMIKE FISMGSLVAL
510 520 530 540 550
IATSQSQQSL HPLLVSAQGV HIFQCVQHIQ PPNQEQRCEI LCNVIKNKLD
560 570 580 590 600
CDINKFTDLD LQHVAKETGG FVARDFTVLV DRAIHSRLSR QSISTREKLV
610 620 630 640 650
LTTLDFQKAL RGFLPASLRS VNLHKPRDLG WDKIGGLHEV RQILMDTIQL
660 670 680 690 700
PAKYPELFAN LPIRQRTGIL LYGPPGTGKT LLAGVIARES RMNFISVKGP
710 720 730 740 750
ELLSKYIGAS EQAVRDIFIR AQAAKPCILF FDEFESIAPR RGHDNTGVTD
760 770 780 790 800
RVVNQLLTQL DGVEGLQGVY VLAATSRPDL IDPALLRPGR LDKCVYCPPP
810 820 830 840 850
DQVSRLEILN VLSDSLPLAD DVDLQHVASV TDSFTGADLK ALLYNAQLEA
860 870 880 890 900
LHGMLLSSGL QDGSSSSDSD LSLSSMVFLN HSSGSDDSAG DGECGLDQSL
910 920 930 940 950
VSLEMSEILP DESKFNMYRL YFGSSYESEL GNGTSSDLSS QCLSAPSSMT
960 970 980 990 1000
QDLPGVPGKD QLFSQPPVLR TASQEGCQEL TQEQRDQLRA DISIIKGRYR
1010 1020 1030 1040 1050
SQSGEDESMN QPGPIKTRLA ISQSHLMTAL GHTRPSISED DWKNFAELYE
1060 1070
SFQNPKRRKN QSGTMFRPGQ KVTLA
Length:1,075
Mass (Da):119,603
Last modified:September 23, 2008 - v1
Checksum:i552FDAF55C371506
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK293757 mRNA. Translation: BAG57177.1.
RefSeqiNP_001269607.1. NM_001282678.1.
UniGeneiHs.164682.

Genome annotation databases

GeneIDi5189.
KEGGihsa:5189.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK293757 mRNA. Translation: BAG57177.1.
RefSeqiNP_001269607.1. NM_001282678.1.
UniGeneiHs.164682.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiB4DER6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5189.
KEGGihsa:5189.

Organism-specific databases

CTDi5189.

Phylogenomic databases

HOVERGENiHBG008169.
KOiK13338.

Miscellaneous databases

GenomeRNAii5189.
NextBioi35471294.

Gene expression databases

BgeeiB4DER6.
ExpressionAtlasiB4DER6. baseline and differential.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR003960. ATPase_AAA_CS.
IPR027417. P-loop_NTPase.
IPR025653. Pex1.
[Graphical view]
PANTHERiPTHR23077:SF12. PTHR23077:SF12. 1 hit.
PfamiPF00004. AAA. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00674. AAA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: CerebellumImported.

Entry informationi

Entry nameiB4DER6_HUMAN
AccessioniPrimary (citable) accession number: B4DER6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 1, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.