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Protein
Submitted name:

Homeobox protein HoxA9ab

Gene

HoxA9ab

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi199 – 258HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotationImported

Names & Taxonomyi

Protein namesi
Submitted name:
Homeobox protein HoxA9abImported
Gene namesi
Name:HoxA9abImported
Synonyms:hoxa9abImported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini197 – 257HomeoboxInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotationImported

Phylogenomic databases

HOVERGENiHBG016849.
KOiK21950.

Family and domain databases

CDDicd00086. homeodomain. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR006711. Hox9_activation_N.
IPR017112. HXA9/HXB9/HXC9.
PfamiView protein in Pfam
PF00046. Homeobox. 1 hit.
PF04617. Hox9_act. 1 hit.
PIRSFiPIRSF037109. Homeobox_Hox9. 1 hit.
PRINTSiPR00024. HOMEOBOX.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

B3SUD1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTSGTLTSY YVDSLILPES EELSAPRYTS GPGGLQHARQ LTSLTDHTEL
60 70 80 90 100
GPCTFPTKAP VFSPSWGHVS TQFPGAVSSV YHHPYGHHQG PASGDVEGRY
110 120 130 140 150
MQSWLLEPIS GSLPLTGLPT SHHYGIKPES LGARVDSALP GSHTALLLSD
160 170 180 190 200
FTNGTVATAS PVDKNTLPGQ TANLNGEIEE KPALDPNNPV SNWLHASATR
210 220 230 240 250
KKRCPYSKHQ ILELEKEFLF NTYLTRDRRF EVARQLNLTE RQVKIWFQNR
260
RMKMKKFNKD CGPKNDL
Length:267
Mass (Da):29,581
Last modified:September 2, 2008 - v1
Checksum:i1CD3D2B8E7AC2E4C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF695313 mRNA. Translation: ABV82048.1.
EU025693 Genomic DNA. Translation: ABW77450.1.
RefSeqiNP_001133038.1. NM_001139566.1.
UniGeneiSsa.42506.

Genome annotation databases

GeneIDi100194476.
KEGGisasa:100194476.

Similar proteinsi

Entry informationi

Entry nameiB3SUD1_SALSA
AccessioniPrimary (citable) accession number: B3SUD1
Entry historyiIntegrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: October 25, 2017
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported