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Protein

Homeobox protein

Gene

HoxD9aa

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi198 – 257HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental proteinUniRule annotation, DNA-bindingUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox proteinUniRule annotation
Gene namesi
Name:HoxD9aaImported
Synonyms:hoxd9aaImported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini196 – 256HomeoboxInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the Abd-B homeobox family.UniRule annotation

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotationImported

Phylogenomic databases

HOVERGENiHBG016849
KOiK09294

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa
IPR006711 Hox9_activation_N
IPR017112 HXA9/HXB9/HXC9
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PF04617 Hox9_act, 1 hit
PIRSFiPIRSF037109 Homeobox_Hox9, 1 hit
PRINTSiPR00024 HOMEOBOX
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

B3SUA8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTSSTLSNY YVDSIMGHEV EDVYGARFIQ GPHTTTSRPS GVGDNADFSS
60 70 80 90 100
CSFAPKSAVF PGPWSSVHTQ STAAVSGIYH PYVHQSHLSA ADSRYVRSWI
110 120 130 140 150
DPISNVSFSG FHSNSRHYGT KPESLPPKRT ESATFETGTP VVDPGPDYAC
160 170 180 190 200
GVSECPEEVT KESVGSDMSS HSEPKEEKQQ QQLDPNNPAA NWIHARSTRK
210 220 230 240 250
KRCPYTKYQT LELEKEFLFN TYLTRDRRYE VARILNLTER QVKIWFQNRR
260
MKMKKMNRER GSKDHL
Length:266
Mass (Da):30,135
Last modified:September 2, 2008 - v1
Checksum:i92698DAF982DD259
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF695290 mRNA Translation: ABV82025.1
RefSeqiNP_001135141.1, NM_001141669.1
UniGeneiSsa.42404

Genome annotation databases

GeneIDi100196640
KEGGisasa:100196640

Similar proteinsi

Entry informationi

Entry nameiB3SUA8_SALSA
AccessioniPrimary (citable) accession number: B3SUA8
Entry historyiIntegrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: March 28, 2018
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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