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B3SRT4 (NSP6_ROTHD) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Non-structural protein 6

Short name=NSP6
OrganismRotavirus A (strain Human/United States/DS-1/1976 G2-P1B[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2) (RV-A) (Rotavirus A (strain DS1)) [Complete proteome]
Taxonomic identifier10950 [NCBI]
Taxonomic lineageVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length92 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subunit structure

Interacts with NSP5 By similarity.

Subcellular location

Host cytoplasm. Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging By similarity.

Sequence similarities

Belongs to the rotavirus A NSP6 family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 9292Non-structural protein 6
PRO_0000369523

Experimental info

Sequence conflict301I → E Ref.1

Sequences

Sequence LengthMass (Da)Tools
B3SRT4 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 33748C9C39421F9E

FASTA9211,014
        10         20         30         40         50         60 
MNRLQQRQLF LENLLVGVNS TFHQMQKLSI NTCCQNLQKI LDLLILHRTI HSPAFRLDRM 

        70         80         90 
QLRQMQMLAC LWIHQRNHDH LATLDTIKWI SP 

« Hide

References

[1]"Sequence analysis of gene 11 equivalents from 'short' and 'super short' strains of rotavirus."
Matsui S.M., Mackow E.R., Matsuno S., Paul P.S., Greenberg H.B.
J. Virol. 64:120-124(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions."
Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., Patton J.T.
J. Virol. 82:11106-11116(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M33608 Genomic RNA. Translation: AAA47327.1.
EF672583 Genomic RNA. Translation: ABV53259.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR006950. Rotavirus_NSP6.
[Graphical view]
PfamPF04866. Rota_NS6. 1 hit.
[Graphical view]
ProDomPD008065. Rota_NS6. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameNSP6_ROTHD
AccessionPrimary (citable) accession number: B3SRT4
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 2, 2008
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families