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B3SRR8

- NSP6_ROTH7

UniProt

B3SRR8 - NSP6_ROTH7

Protein

Non-structural protein 6

Gene
N/A
Organism
Rotavirus A (isolate Human/United Kingdom/A64/1987 G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3) (RV-A)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    Non-structural protein 6
    Short name:
    NSP6
    OrganismiRotavirus A (isolate Human/United Kingdom/A64/1987 G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3) (RV-A)
    Taxonomic identifieri578827 [NCBI]
    Taxonomic lineageiVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
    Virus hostiHomo sapiens (Human) [TaxID: 9606]
    ProteomesiUP000001456: Genome

    Subcellular locationi

    Host cytoplasm
    Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging.By similarity

    GO - Cellular componenti

    1. host cell cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 9898Non-structural protein 6PRO_0000369510Add
    BLAST

    Interactioni

    Subunit structurei

    Interacts with NSP5.By similarity

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the rotavirus A NSP6 family.Curated

    Family and domain databases

    InterProiIPR006950. Rotavirus_NSP6.
    [Graphical view]
    PfamiPF04866. Rota_NS6. 1 hit.
    [Graphical view]
    ProDomiPD008065. Rota_NS6. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    B3SRR8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNHLQQRQLF LENLLVGVNN TFHQMQKHSI NTCCQSLQKI LDHLILLQTI   50
    HSPAFRLDRM QLRQMQTLAC LWIHQHNHDH QAMLGAIKWI SPLIKELR 98
    Length:98
    Mass (Da):11,652
    Last modified:September 2, 2008 - v1
    Checksum:i79CB2671E07C4C9D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF672569 Genomic RNA. Translation: ABV53243.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF672569 Genomic RNA. Translation: ABV53243.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR006950. Rotavirus_NSP6.
    [Graphical view ]
    Pfami PF04866. Rota_NS6. 1 hit.
    [Graphical view ]
    ProDomi PD008065. Rota_NS6. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions."
      Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., Patton J.T.
      J. Virol. 82:11106-11116(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiNSP6_ROTH7
    AccessioniPrimary (citable) accession number: B3SRR8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3