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B3RS92 (B3RS92_TRIAD) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:TRIADDRAFT_50031 EMBL EDV27014.1
OrganismTrichoplax adhaerens (Trichoplax reptans) [Reference proteome]
Taxonomic identifier10228 [NCBI]
Taxonomic lineageEukaryotaMetazoaPlacozoaTrichoplax

Protein attributes

Sequence length924 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
B3RS92 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 373DF95050126200

FASTA924105,469
        10         20         30         40         50         60 
MATKTVADEV PFFDLCTLLE RISQASGKEK KKKIYSDFLS SWRTAHFKLY GKSSTEDSFF 

        70         80         90        100        110        120 
SAMRLLLPQM DKERLAYGMK ETALAKYYID ILSISKESPA AQKLMNYRAP AAAKQDAGDF 

       130        140        150        160        170        180 
ASVAFFVLRT RCPEKGTLSI ADVNECLDNI AMANSQRKRD DVRNNLRKLL RNTCAMEQKW 

       190        200        210        220        230        240 
LIRMIMKELK VGLSENSIFS VFHPDASDLF NVSSSLSKVC SDLMDPDVRL NETSIELFVP 

       250        260        270        280        290        300 
FRPMLAERCP LQQVEKLMNH EMFYIECKAD GDRMQLHKDG NKYMYFSRSS KEYTSSFGAT 

       310        320        330        340        350        360 
PDEGSFTPFI VNVFSSQVQS AILDGEMVGY DMENDCYVPR GENIDVKAVG RTSAIIQQCY 

       370        380        390        400        410        420 
MVFDILMLNG KKLANHSLHE RLGYLKQVFT PIPGRIMVVK QRQATSKKDV LDSLNEAIDT 

       430        440        450        460        470        480 
REEGIIIKNP ISTYKPDQRK GSGWFKIKPE YVDSLSDQLD LLIIGGYFGV GRRGGLISHF 

       490        500        510        520        530        540 
LLGVAVPPEN PSEHPKVFQS FCKVGSGYTI AELKELGEKL KPYWKPMNPK KLPPYFQLMS 

       550        560        570        580        590        600 
EKPDLWIEPI HSKIVQIKAA EIVPSTDKFK CNCTLRYPRV ELVREDKYWY ECMDLDELDQ 

       610        620        630        640        650        660 
LKSIAEGRLA YQHADETSET LMFGPSKKRQ KANIRPETVC TIAPQFRTAD ISDVSQVFSG 

       670        680        690        700        710        720 
KEFCVVSGPK HNPKASVEKR IVENGGTFVQ NPGMETFCVI TDRKTIRARN IISQNIYDVV 

       730        740        750        760        770        780 
KVDWLLDSLA AGRCLEWQPN QVIHSSPKTA EVFAKEYDKY GDSYTKDIDN PVALKAIFDK 

       790        800        810        820        830        840 
INNEDDLVST ATQKEICDVE MRYFPDESPL GLFRRCRAYF DWYRQVDNDA TRIRDSPLDL 

       850        860        870        880        890        900 
IGLNFRYYGG TISSILDRHV THIVFDPSDL SRMQKLRKLD KNRKLLRHFV GSEWVTASID 

       910        920 
AASQLSERNY EPLMPRDNSS DSEY 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS985243 Genomic DNA. Translation: EDV27014.1.
RefSeqXP_002111010.1. XM_002110974.1.

3D structure databases

ProteinModelPortalB3RS92.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10228.JGI50031.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaTriadT50031; TriadP50031; TriadG50031.
GeneID6751687.
KEGGtad:TRIADDRAFT_50031.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000007831.
KOK10777.
OMAHMCPSTK.
OrthoDBEOG7BKCT2.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR021536. DNA_ligase_IV.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3RS92_TRIAD
AccessionPrimary (citable) accession number: B3RS92
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: November 13, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)