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B3RS92

- B3RS92_TRIAD

UniProt

B3RS92 - B3RS92_TRIAD

Protein

DNA ligase

Gene

TRIADDRAFT_50031

Organism
Trichoplax adhaerens (Trichoplax reptans)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (02 Sep 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:TRIADDRAFT_50031Imported
    OrganismiTrichoplax adhaerens (Trichoplax reptans)Imported
    Taxonomic identifieri10228 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaPlacozoaTrichoplax
    ProteomesiUP000009022: Unassembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi10228.JGI50031.

    Structurei

    3D structure databases

    ProteinModelPortaliB3RS92.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000007831.
    KOiK10777.
    OMAiHMCPSTK.
    OrthoDBiEOG7BKCT2.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR021536. DNA_ligase_IV_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    PF11411. DNA_ligase_IV. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 2 hits.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B3RS92-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATKTVADEV PFFDLCTLLE RISQASGKEK KKKIYSDFLS SWRTAHFKLY    50
    GKSSTEDSFF SAMRLLLPQM DKERLAYGMK ETALAKYYID ILSISKESPA 100
    AQKLMNYRAP AAAKQDAGDF ASVAFFVLRT RCPEKGTLSI ADVNECLDNI 150
    AMANSQRKRD DVRNNLRKLL RNTCAMEQKW LIRMIMKELK VGLSENSIFS 200
    VFHPDASDLF NVSSSLSKVC SDLMDPDVRL NETSIELFVP FRPMLAERCP 250
    LQQVEKLMNH EMFYIECKAD GDRMQLHKDG NKYMYFSRSS KEYTSSFGAT 300
    PDEGSFTPFI VNVFSSQVQS AILDGEMVGY DMENDCYVPR GENIDVKAVG 350
    RTSAIIQQCY MVFDILMLNG KKLANHSLHE RLGYLKQVFT PIPGRIMVVK 400
    QRQATSKKDV LDSLNEAIDT REEGIIIKNP ISTYKPDQRK GSGWFKIKPE 450
    YVDSLSDQLD LLIIGGYFGV GRRGGLISHF LLGVAVPPEN PSEHPKVFQS 500
    FCKVGSGYTI AELKELGEKL KPYWKPMNPK KLPPYFQLMS EKPDLWIEPI 550
    HSKIVQIKAA EIVPSTDKFK CNCTLRYPRV ELVREDKYWY ECMDLDELDQ 600
    LKSIAEGRLA YQHADETSET LMFGPSKKRQ KANIRPETVC TIAPQFRTAD 650
    ISDVSQVFSG KEFCVVSGPK HNPKASVEKR IVENGGTFVQ NPGMETFCVI 700
    TDRKTIRARN IISQNIYDVV KVDWLLDSLA AGRCLEWQPN QVIHSSPKTA 750
    EVFAKEYDKY GDSYTKDIDN PVALKAIFDK INNEDDLVST ATQKEICDVE 800
    MRYFPDESPL GLFRRCRAYF DWYRQVDNDA TRIRDSPLDL IGLNFRYYGG 850
    TISSILDRHV THIVFDPSDL SRMQKLRKLD KNRKLLRHFV GSEWVTASID 900
    AASQLSERNY EPLMPRDNSS DSEY 924
    Length:924
    Mass (Da):105,469
    Last modified:September 2, 2008 - v1
    Checksum:i373DF95050126200
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS985243 Genomic DNA. Translation: EDV27014.1.
    RefSeqiXP_002111010.1. XM_002110974.1.

    Genome annotation databases

    EnsemblMetazoaiTriadT50031; TriadP50031; TriadG50031.
    GeneIDi6751687.
    KEGGitad:TRIADDRAFT_50031.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS985243 Genomic DNA. Translation: EDV27014.1 .
    RefSeqi XP_002111010.1. XM_002110974.1.

    3D structure databases

    ProteinModelPortali B3RS92.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10228.JGI50031.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai TriadT50031 ; TriadP50031 ; TriadG50031 .
    GeneIDi 6751687.
    KEGGi tad:TRIADDRAFT_50031.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000007831.
    KOi K10777.
    OMAi HMCPSTK.
    OrthoDBi EOG7BKCT2.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR021536. DNA_ligase_IV_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    PF11411. DNA_ligase_IV. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 2 hits.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Grell-BS-1999Imported.

    Entry informationi

    Entry nameiB3RS92_TRIAD
    AccessioniPrimary (citable) accession number: B3RS92
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3