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B3RS92

- B3RS92_TRIAD

UniProt

B3RS92 - B3RS92_TRIAD

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Protein
DNA ligase
Gene
TRIADDRAFT_50031
Organism
Trichoplax adhaerens (Trichoplax reptans)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:TRIADDRAFT_50031Imported
OrganismiTrichoplax adhaerens (Trichoplax reptans)
Taxonomic identifieri10228 [NCBI]
Taxonomic lineageiEukaryotaMetazoaPlacozoaTrichoplax
ProteomesiUP000009022: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi10228.JGI50031.

Structurei

3D structure databases

ProteinModelPortaliB3RS92.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000007831.
KOiK10777.
OMAiHMCPSTK.
OrthoDBiEOG7BKCT2.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR021536. DNA_ligase_IV_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3RS92-1 [UniParc]FASTAAdd to Basket

« Hide

MATKTVADEV PFFDLCTLLE RISQASGKEK KKKIYSDFLS SWRTAHFKLY    50
GKSSTEDSFF SAMRLLLPQM DKERLAYGMK ETALAKYYID ILSISKESPA 100
AQKLMNYRAP AAAKQDAGDF ASVAFFVLRT RCPEKGTLSI ADVNECLDNI 150
AMANSQRKRD DVRNNLRKLL RNTCAMEQKW LIRMIMKELK VGLSENSIFS 200
VFHPDASDLF NVSSSLSKVC SDLMDPDVRL NETSIELFVP FRPMLAERCP 250
LQQVEKLMNH EMFYIECKAD GDRMQLHKDG NKYMYFSRSS KEYTSSFGAT 300
PDEGSFTPFI VNVFSSQVQS AILDGEMVGY DMENDCYVPR GENIDVKAVG 350
RTSAIIQQCY MVFDILMLNG KKLANHSLHE RLGYLKQVFT PIPGRIMVVK 400
QRQATSKKDV LDSLNEAIDT REEGIIIKNP ISTYKPDQRK GSGWFKIKPE 450
YVDSLSDQLD LLIIGGYFGV GRRGGLISHF LLGVAVPPEN PSEHPKVFQS 500
FCKVGSGYTI AELKELGEKL KPYWKPMNPK KLPPYFQLMS EKPDLWIEPI 550
HSKIVQIKAA EIVPSTDKFK CNCTLRYPRV ELVREDKYWY ECMDLDELDQ 600
LKSIAEGRLA YQHADETSET LMFGPSKKRQ KANIRPETVC TIAPQFRTAD 650
ISDVSQVFSG KEFCVVSGPK HNPKASVEKR IVENGGTFVQ NPGMETFCVI 700
TDRKTIRARN IISQNIYDVV KVDWLLDSLA AGRCLEWQPN QVIHSSPKTA 750
EVFAKEYDKY GDSYTKDIDN PVALKAIFDK INNEDDLVST ATQKEICDVE 800
MRYFPDESPL GLFRRCRAYF DWYRQVDNDA TRIRDSPLDL IGLNFRYYGG 850
TISSILDRHV THIVFDPSDL SRMQKLRKLD KNRKLLRHFV GSEWVTASID 900
AASQLSERNY EPLMPRDNSS DSEY 924
Length:924
Mass (Da):105,469
Last modified:September 2, 2008 - v1
Checksum:i373DF95050126200
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS985243 Genomic DNA. Translation: EDV27014.1.
RefSeqiXP_002111010.1. XM_002110974.1.

Genome annotation databases

EnsemblMetazoaiTriadT50031; TriadP50031; TriadG50031.
GeneIDi6751687.
KEGGitad:TRIADDRAFT_50031.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS985243 Genomic DNA. Translation: EDV27014.1 .
RefSeqi XP_002111010.1. XM_002110974.1.

3D structure databases

ProteinModelPortali B3RS92.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10228.JGI50031.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai TriadT50031 ; TriadP50031 ; TriadG50031 .
GeneIDi 6751687.
KEGGi tad:TRIADDRAFT_50031.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000007831.
KOi K10777.
OMAi HMCPSTK.
OrthoDBi EOG7BKCT2.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR021536. DNA_ligase_IV_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Grell-BS-1999Imported.

Entry informationi

Entry nameiB3RS92_TRIAD
AccessioniPrimary (citable) accession number: B3RS92
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: September 3, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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