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Protein
Submitted name:

Cupriavidus taiwanensis str. LMG19424 chromosome 2, complete genome

Gene

RALTA_B2120

Organism
Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCTAI164546:GJNE-5297-MONOMER.
CTAI977880:GLC7-5297-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Cupriavidus taiwanensis str. LMG19424 chromosome 2, complete genomeImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RALTA_B2120Imported
OrganismiCupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424))Imported
Taxonomic identifieri164546 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeCupriavidus
ProteomesiUP000001692 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi977880.RALTA_B2120.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3RCS2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKTTTQDSR ARRAAAKGSA KPAAKRSGSA RPAARGAAPA EGTTAPLEKY
60 70 80 90 100
RRMRDFGATP EPSGGTARAT PRKRAAALSF VIQKHAARRL HYDFRLELGG
110 120 130 140 150
TLKSWAVPKG PSLDPSDKRM AVHVEDHPLD YASFEGVIPA GHYGAGTVIV
160 170 180 190 200
WDRGTWVPVG DPEAGYRSGK LKFELRGEKL HGHWTLVRMH GSRQKEQDAW
210 220 230 240 250
LLIKERDDAA VPASDFDVVE ALPDSVLGGT QRKAAAKRAS AGKAATATAA
260 270 280 290 300
AEAATPAAHE AIRALKPPPG ATRAALPLTL APQLATLVEK PPPDAAAWRY
310 320 330 340 350
EIKFDGYRLL ARVDGKDVRL FTRQGHDWTS KLRALARDIG ALGLPDGWID
360 370 380 390 400
GEIVVLGKHG QTDFQALQNA FDTSRVEAIQ YFAFDLPYFA GHDLRKVPLV
410 420 430 440 450
ERRALLRRIF GHNASPRLQF SEDFEASAGD MLDAACRMKL EGVIGKRADS
460 470 480 490 500
AYVSARSNTW IKLKCTLRQE FVVAGFTDPK GSRNGIGSLL LGVHDTGGRL
510 520 530 540 550
RYAGNVGTGF DTRTLDELRA QLDALRADEA PFHTVPAGVR GHWVKPRLVA
560 570 580 590 600
EVSFGNWTRE GRVRHAVFHG LRTDKPAAAV SVEQPSVPAG KGKAAATTRG
610 620 630 640 650
KPASTPASRS KPGAARRPTA VGGKVSISHA ERVIDAESGL TKGELVRYYE
660 670 680 690 700
RAAALMLPHL RGRPIAMVRA PSGVGGEQFF QRHSDTLRVD GLNVLDPGLW
710 720 730 740 750
PGHPALLEIT SAEALVAAAQ LNVVEFHTWN ASKRSIDRPN RIIFDLDPGE
760 770 780 790 800
GVPWAQVQEA AAMMKALLDE LGLASFLKTS GGKGLHVVVP VTPRAGWDEV
810 820 830 840 850
KDFARDVVLH VAATLPQRFV AKSGARNRVG KIFIDYLRNG MGATTVAAFS
860 870 880 890 900
ARARPGLGVS IPVAWEELEA LTSATHWTVA NVEARLDALE AADPWADYAG
910
TRQAITRAAG RLARAA
Length:916
Mass (Da):98,634
Last modified:September 2, 2008 - v1
Checksum:i0DFED22347E268F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU633750 Genomic DNA. Translation: CAQ72697.1.

Genome annotation databases

EnsemblBacteriaiCAQ72697; CAQ72697; RALTA_B2120.
KEGGicti:RALTA_B2120.
PATRICi21537905. VBICupTai42494_5560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU633750 Genomic DNA. Translation: CAQ72697.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi977880.RALTA_B2120.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAQ72697; CAQ72697; RALTA_B2120.
KEGGicti:RALTA_B2120.
PATRICi21537905. VBICupTai42494_5560.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciCTAI164546:GJNE-5297-MONOMER.
CTAI977880:GLC7-5297-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: R1 / LMG 19424Imported.

Entry informationi

Entry nameiB3RCS2_CUPTR
AccessioniPrimary (citable) accession number: B3RCS2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: June 24, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.