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B3RCS2 (B3RCS2_CUPTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL CAQ72697.1
EC=6.5.1.1 EMBL CAQ72697.1
Gene names
Ordered Locus Names:RALTA_B2120 EMBL CAQ72697.1
OrganismCupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424)) [Complete proteome] [HAMAP] EMBL CAQ72697.1
Taxonomic identifier164546 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus

Protein attributes

Sequence length916 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAQ72697.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B3RCS2 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 0DFED22347E268F7

FASTA91698,634
        10         20         30         40         50         60 
MAKTTTQDSR ARRAAAKGSA KPAAKRSGSA RPAARGAAPA EGTTAPLEKY RRMRDFGATP 

        70         80         90        100        110        120 
EPSGGTARAT PRKRAAALSF VIQKHAARRL HYDFRLELGG TLKSWAVPKG PSLDPSDKRM 

       130        140        150        160        170        180 
AVHVEDHPLD YASFEGVIPA GHYGAGTVIV WDRGTWVPVG DPEAGYRSGK LKFELRGEKL 

       190        200        210        220        230        240 
HGHWTLVRMH GSRQKEQDAW LLIKERDDAA VPASDFDVVE ALPDSVLGGT QRKAAAKRAS 

       250        260        270        280        290        300 
AGKAATATAA AEAATPAAHE AIRALKPPPG ATRAALPLTL APQLATLVEK PPPDAAAWRY 

       310        320        330        340        350        360 
EIKFDGYRLL ARVDGKDVRL FTRQGHDWTS KLRALARDIG ALGLPDGWID GEIVVLGKHG 

       370        380        390        400        410        420 
QTDFQALQNA FDTSRVEAIQ YFAFDLPYFA GHDLRKVPLV ERRALLRRIF GHNASPRLQF 

       430        440        450        460        470        480 
SEDFEASAGD MLDAACRMKL EGVIGKRADS AYVSARSNTW IKLKCTLRQE FVVAGFTDPK 

       490        500        510        520        530        540 
GSRNGIGSLL LGVHDTGGRL RYAGNVGTGF DTRTLDELRA QLDALRADEA PFHTVPAGVR 

       550        560        570        580        590        600 
GHWVKPRLVA EVSFGNWTRE GRVRHAVFHG LRTDKPAAAV SVEQPSVPAG KGKAAATTRG 

       610        620        630        640        650        660 
KPASTPASRS KPGAARRPTA VGGKVSISHA ERVIDAESGL TKGELVRYYE RAAALMLPHL 

       670        680        690        700        710        720 
RGRPIAMVRA PSGVGGEQFF QRHSDTLRVD GLNVLDPGLW PGHPALLEIT SAEALVAAAQ 

       730        740        750        760        770        780 
LNVVEFHTWN ASKRSIDRPN RIIFDLDPGE GVPWAQVQEA AAMMKALLDE LGLASFLKTS 

       790        800        810        820        830        840 
GGKGLHVVVP VTPRAGWDEV KDFARDVVLH VAATLPQRFV AKSGARNRVG KIFIDYLRNG 

       850        860        870        880        890        900 
MGATTVAAFS ARARPGLGVS IPVAWEELEA LTSATHWTVA NVEARLDALE AADPWADYAG 

       910 
TRQAITRAAG RLARAA

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References

[1]"Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia."
Amadou C., Pascal G., Mangenot S., Glew M., Bontemps C., Capela D., Carrere S., Cruveiller S., Dossat C., Lajus A., Marchetti M., Poinsot V., Rouy Z., Servin B., Saad M., Schenowitz C., Barbe V., Batut J., Medigue C., Masson-Boivin C.
Genome Res. 18:1472-1483(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: R1 / LMG 19424.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CU633750 Genomic DNA. Translation: CAQ72697.1.
RefSeqYP_002008749.1. NC_010530.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING164546.RALTA_B2120.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ72697; CAQ72697; RALTA_B2120.
GeneID6456443.
KEGGcti:RALTA_B2120.
PATRIC21537905. VBICupTai42494_5560.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALKSDPWA.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycCTAI164546:GJNE-5297-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3RCS2_CUPTR
AccessionPrimary (citable) accession number: B3RCS2
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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