B3RBB4 (B3RBB4_CUPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL CAQ72189.1
EC=6.5.1.1 EMBL CAQ72189.1

Gene names

Ordered Locus Names:

RALTA_B1594 EMBL CAQ72189.1

Organism

Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424)) [Complete proteome] [HAMAP] EMBL CAQ72189.1

Taxonomic identifier

164546 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus

Protein attributes

Sequence length	557 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CAQ72189.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3RBB4 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: AA36D921BFBA5365	FASTA	557	61,824
	10 20 30 40 50 60 MKAFADLYAA LDGTTSTKAR LGALVDYLRS APAEDAAWAV YFLAGGKPRQ IVPVSLLRDL 70 80 90 100 110 120 ARQAADLPDW LFEESYQAVG DLAETIALLL PDPRDADHAG LAEWVEQRLL PLRGLPPDAL 130 140 150 160 170 180 MPRLDALWRP LDAHGRLVLF KLITGAFRVG VSRLLVTRAL GEVAGIDPKR VAERMVGYTD 190 200 210 220 230 240 LSARPDAARF LALLAPEDED DRALRAGGQP YPFFLAHPLQ APAEQFDTVL GTPGAWLVEW 250 260 270 280 290 300 KWDGIRAQLV RRGGQTWLWS RGEELITERF PELQQAAATL PDGTVLDGEI VIWQQGRVQP 310 320 330 340 350 360 FALLQQRIGR KTLSARLLRE APAILMAYDL LEWQGEDWRT RPQAERRARL EQVVAAHVHP 370 380 390 400 410 420 ALELSPLVEA DSWERYARLR DASRELGVEG FMLKAAGAAY GAGRTKDVGV WWKWKIDPYS 430 440 450 460 470 480 VDAVLVYAQR GHGRRASLYT DFTFAVWNGP PGTPGRALVP FAKAYSGLTD DEMRAVDAIV 490 500 510 520 530 540 RRTTVEKFGP VRSVEPTQVF ELGFEGIARS GRHKSGIAVR FPRMLRWRTD KPIDEADTLA 550 TLEAMLPATG APREDAA

References

[1]

"Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia." Amadou C., Pascal G., Mangenot S., Glew M., Bontemps C., Capela D., Carrere S., Cruveiller S., Dossat C., Lajus A., Marchetti M., Poinsot V., Rouy Z., Servin B., Saad M., Schenowitz C., Barbe V., Batut J., Medigue C., Masson-Boivin C. Genome Res. 18:1472-1483(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: R1 / LMG 19424.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU633750 Genomic DNA. Translation: CAQ72189.1.
RefSeq	YP_002008243.1. NC_010530.1.
3D structure databases
ProteinModelPortal	B3RBB4.
ModBase	Search...
Protein-protein interaction databases
STRING	164546.RALTA_B1594.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAQ72189; CAQ72189; RALTA_B1594.
GeneID	6456063.
KEGG	cti:RALTA_B1594.
PATRIC	21536873. VBICupTai42494_5044.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	CTAI164546:GJNE-4789-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3RBB4_CUPTR

Accession

Primary (citable) accession number: B3RBB4

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)