B3R389 (B3R389_CUPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
D-amino acid dehydrogenase small subunit 2 HAMAP MF_01202
EC=1.4.99.1 HAMAP MF_01202

Gene names

Name:	dadA1 EMBL CAQ68770.1
Synonyms:	dadA2 HAMAP MF_01202
Ordered Locus Names:	RALTA_A0798

Organism

Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424)) [Complete proteome] [HAMAP]

Taxonomic identifier

164546 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus

Protein attributes

Sequence length	434 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 SAAS SAAS023080
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 SAAS SAAS023080
Cofactor	FAD By similarity. HAMAP MF_01202 SAAS SAAS023080
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity. HAMAP MF_01202 SAAS SAAS023080
Sequence similarities	Belongs to the DadA oxidoreductase family. HAMAP MF_01202

Ontologies

Keywords
Ligand	FAD HAMAP MF_01202 SAAS SAAS023080 Flavoprotein HAMAP MF_01202 SAAS SAAS023080
Molecular function	Oxidoreductase HAMAP MF_01202 SAAS SAAS023080 EMBL CAQ68770.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Nucleotide binding	3 – 17	15	FAD By similarity HAMAP MF_01202

Sequences

	Sequence		Length	Mass (Da)
	B3R389 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: D36CDE22FD7CF09A	FASTA	434	46,718
	10 20 30 40 50 60 MRVLVLGSGV IGVTSAWYLA KAGHEVTVVD REAGPALGTS FANAGQISPG YASPWAAPGV 70 80 90 100 110 120 PLKAIKWMFQ EHAPLSIRPD GTLFQLQWMW QMLLNCSAGR YAVNKERMVR LAEYSRDCIR 130 140 150 160 170 180 ALRAETGIAY EGRQQGTLQV FRTDEQLHGA AKDIAVLEQA GVPYQLLSRE ELAASEPALA 190 200 210 220 230 240 AVRHKLAGGL RLPNDETGDC ALFTQRLANM ASTLGVRFLY NRSIDGLMSQ GDAVTGAVVD 250 260 270 280 290 300 GEPMSADLVV VALGSWSTQL VKPFLRGMSN LPVYPLKGFS ITVPLTDASR GPVSTVLDET 310 320 330 340 350 360 YKVALTRFDD RIRVGGMAQI VGYDRSLDPA KRRTLEHVVT DLFPGAGDVS QATFWTGLRP 370 380 390 400 410 420 MTPDGTPIVG PTQVRGLWLN TGHGTLGWTM ACGSGKLLSD LVSGKSPAIR ADDLSVSRYL 430 KPARHHLAPR PAAA

References

[1]

"Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia." Amadou C., Pascal G., Mangenot S., Glew M., Bontemps C., Capela D., Carrere S., Cruveiller S., Dossat C., Lajus A., Marchetti M., Poinsot V., Rouy Z., Servin B., Saad M., Schenowitz C., Barbe V., Batut J., Medigue C., Masson-Boivin C. Genome Res. 18:1472-1483(2008) [PubMed: 18490699] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU633749 Genomic DNA. Translation: CAQ68770.1.
RefSeq	YP_002004839.1. NC_010528.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B3R389.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6452707.
GenomeReviews	Gene locus RALTA_A0798 in contig CU633749_GR.
KEGG	cti:RALTA_A0798.
PATRIC	21528228. VBICupTai42494_0796.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG729204.
OMA	VDRQPAV.
ProtClustDB	PRK00711.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view]
KO	K00285.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3R389_CUPTR

Accession

Primary (citable) accession number: B3R389

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)