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B3R0G3 (B3R0G3_PHYMT) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Thymidine kinase HAMAP MF_00124 RuleBase RU000544
EC=2.7.1.21 HAMAP MF_00124 RuleBase RU000544
Gene names
Name:tdk HAMAP MF_00124 EMBL CAP18327.1
Ordered Locus Names:ATP_00140
OrganismPhytoplasma mali (strain AT) [Complete proteome] [HAMAP]
Taxonomic identifier482235 [NCBI]
Taxonomic lineageBacteria › Tenericutes › Mollicutes › Acholeplasmatales › Acholeplasmataceae › Candidatus Phytoplasma › 16SrX (Apple proliferation group)

Protein attributes

Sequence length193 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + thymidine = ADP + thymidine 5'-phosphate. HAMAP MF_00124 RuleBase RU000544 SAAS SAAS020634

Subunit structure

Homotetramer By similarity. HAMAP MF_00124

Subcellular location

Cytoplasm By similarity HAMAP MF_00124.

Sequence similarities

Belongs to the thymidine kinase family. HAMAP MF_00124 RuleBase RU004165

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding14 – 218ATP By similarity HAMAP MF_00124
Nucleotide binding88 – 914ATP By similarity HAMAP MF_00124

Sites

Active site891Proton acceptor By similarity HAMAP MF_00124

Sequences

Sequence LengthMass (Da)Tools
B3R0G3 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 43C1447ECBD54C10

FASTA19322,324
        10         20         30         40         50         60 
MSYDEHNLIE IICGPMFAGK TEKIIEIFKK LKKLNKKVLV FKSKLDIRFS KKQELVSHNL 

        70         80         90        100        110        120 
NTINSFVIEK SKEILDFIKI DTEIIIIDEV QFLDNQIVDI VDYLANKNIK SIIAGLDLDF 

       130        140        150        160        170        180 
RGKPFGPMPF LLSIADKVTK LKSICSISGQ PANRTQRLIN QKPAINSEPI IMTEDNEIVK 

       190 
YEPRNRKYHE FKK

« Hide

References

[1]"The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'."
Kube M., Schneider B., Kuhl H., Dandekar T., Heitmann K., Migdoll A.M., Reinhardt R., Seemueller E.
BMC Genomics 9:306-306(2008) [PubMed: 18582369] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CU469464 Genomic DNA. Translation: CAP18327.1.
RefSeqYP_002004180.1. NC_011047.1.

3D structure databases

ProteinModelPortalB3R0G3.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6450235.
GenomeReviewsGene locus ATP_00140 in contig CU469464_GR.
KEGGpml:ATP_00140.
PATRIC31994467. VBICanPhy52977_0144.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG522108.
OMAEPRCRHH.
PhylomeDBB3R0G3.
ProtClustDBPRK04296.

Family and domain databases

HAMAPMF_00124. Thymidine_kinase.
[Tree]
InterProIPR001267. Thymidine_kinase.
IPR020634. Thymidine_kinase_subgr.
[Graphical view]
KOK00857.
PANTHERPTHR11441. TK_cell. 1 hit.
PfamPF00265. TK. 1 hit.
[Graphical view]
PIRSFPIRSF035805. TK_cell. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB3R0G3_PHYMT
AccessionPrimary (citable) accession number: B3R0G3
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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