Reviewed, UniProtKB/Swiss-Prot B3QWJ5 (PDAD_CHLT3)

Names and origin

Protein names

Recommended name:
    Probable pyruvoyl-dependent arginine decarboxylase
      Short name=PvlArgDC
    EC=4.1.1.19
Cleaved into the following 2 chains:
    1- Recommended name:
            Pyruvoyl-dependent arginine decarboxylase subunit beta
    2- Recommended name:
            Pyruvoyl-dependent arginine decarboxylase subunit alpha

Gene names

Name:	pdaD
Ordered Locus Names:	Ctha_2304

Organism

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) [Complete proteome] [HAMAP]

Taxonomic identifier

517418 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chloroherpeton

Protein attributes

Sequence length	182 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. HAMAP MF_01404
Cofactor	Pyruvoyl group By similarity.
Sequence similarities	Belongs to the pdaD family.

Ontologies

Keywords
Ligand	Pyruvate
Molecular function	Decarboxylase Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 42	42	Pyruvoyl-dependent arginine decarboxylase subunit beta By similarity		PRO_1000145466
	Chain	43 – 182	140	Pyruvoyl-dependent arginine decarboxylase subunit alpha By similarity		PRO_1000145467
Sites
	Site	42 – 43	2	Cleavage (non-hydrolytic) By similarity
Amino acid modifications
	Modified residue	43	1	Pyruvic acid (Ser) By similarity

Sequences

	Sequence		Length	Mass (Da)
	B3QWJ5-1 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: F765EA2929CAAC0A	FASTA	182	20,081
	10 20 30 40 50 60 MTFVPSKIFF TKGVGRHREY LSSFELALRD AKIEKCNLVT VSSIYPPSCK RISIEEGLKH 70 80 90 100 110 120 LSPGQITFCV MARNSTNERN RLIASSIGVA LPADASQYGY LSEHHPYGET AEYAGEYAED 130 140 150 160 170 180 LAATMLATTL GIEFDSNTAW DEREEVYKMS GKIVKSFNVT QSAEGDKNGL WTTVISAAIL LP

References

[1]

"Complete sequence of Chloroherpeton thalassium ATCC 35110." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Liu Z., Li T., Zhao F. , Overmann J., Bryant D.A., Richardson P. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP001100 Genomic DNA. Translation: ACF14755.1.
RefSeq	YP_001997202.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	6423386.
GenomeReviews	Gene locus Ctha_2304 in contig CP001100_GR.
KEGG	cts:Ctha_2304.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	YKMSGKI.
Family and domain databases
HAMAP	MF_01404. [Tree]
InterPro	IPR016105. Pyr-dep_his/arg-deCO2ase_sand. IPR002724. Pyruvoyl-dep_arg_deCO2ase. [Graphical view]
Gene3D	G3DSA:3.50.20.10. Pyr-dep_his/arg-deCO2ase_sand. 1 hit.
Pfam	PF01862. PvlArgDC. 1 hit. [Graphical view]
PIRSF	PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
TIGRFAMs	TIGR00286. PvlArgDC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

PDAD_CHLT3

Accession

Primary (citable) accession number: B3QWJ5

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	September 2, 2008
Last modified:	November 3, 2009
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)