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B3QQS5 (B3QQS5_CHLP8) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length229 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318

Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318

Sequence similarities

Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Sequences

Sequence LengthMass (Da)Tools
B3QQS5 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 13DFBF2092117C62

FASTA22924,501
        10         20         30         40         50         60 
MAGKNYKNAA AKVDRAQEYE LAEAIEKVKE ITTTKFDATI DVAMKLGVDP RHADQVVRGT 

        70         80         90        100        110        120 
VMLPHGTGKT VSVLVVCKEN KAEEAREAGA DFVGFEDYIE KIQNGWTDVD VVVATPDVMG 

       130        140        150        160        170        180 
QLGKVARILG PRGLMPNPKS GTVTMDVAKA VSEVKAGKIE FRVDKAGNIH APVGKVSFDS 

       190        200        210        220 
DKLAGNIGSF IKEVVRLKPS AAKGQYLQGI TISSTMSPGV KVKKDKFVA 

« Hide

References

[1]"Complete sequence of Chlorobaculum parvum NCIB 8327."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Zhao F., Li T., Liu Z. expand/collapse author list , Overmann J., Bryant D.A., Richardson P.
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIB 8327 EMBL ACF12278.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001099 Genomic DNA. Translation: ACF12278.1.
RefSeqYP_001999478.1. NC_011027.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING517417.Cpar_1886.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACF12278; ACF12278; Cpar_1886.
GeneID6420833.
KEGGcpc:Cpar_1886.
PATRIC21367083. VBIChlPar72705_1889.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0081.
HOGENOMHOG000207015.
KOK02863.
OMAIQQGWFE.
OrthoDBEOG6FBX2G.
ProtClustDBPRK05424.

Enzyme and pathway databases

BioCycCPAR517417:GH95-1934-MONOMER.

Family and domain databases

Gene3D3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
HAMAPMF_01318_B. Ribosomal_L1_B.
InterProIPR005878. Ribosom_L1_bac-type.
IPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. SSF56808. 1 hit.
TIGRFAMsTIGR01169. rplA_bact. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3QQS5_CHLP8
AccessionPrimary (citable) accession number: B3QQS5
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: February 19, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)