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B3QQS5

- B3QQS5_CHLP8

UniProt

B3QQS5 - B3QQS5_CHLP8

Protein

50S ribosomal protein L1

Gene

rplA

Organism
Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327))
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (02 Sep 2008)
      Previous versions | rss
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    Functioni

    Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.UniRule annotation
    Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of translation Source: UniProtKB-KW
    2. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    RepressorUniRule annotation, Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Keywords - Biological processi

    Translation regulationUniRule annotation

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotation, tRNA-bindingUniRule annotation

    Enzyme and pathway databases

    BioCyciCPAR517417:GH95-1934-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L1UniRule annotation
    Gene namesi
    Name:rplAUniRule annotation
    Ordered Locus Names:Cpar_1886Imported
    OrganismiChlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327))Imported
    Taxonomic identifieri517417 [NCBI]
    Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobaculum
    ProteomesiUP000008811: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. large ribosomal subunit Source: InterPro

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi517417.Cpar_1886.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L1P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0081.
    HOGENOMiHOG000207015.
    KOiK02863.
    OMAiMAGKKYR.
    OrthoDBiEOG6FBX2G.

    Family and domain databases

    Gene3Di3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    HAMAPiMF_01318_B. Ribosomal_L1_B.
    InterProiIPR005878. Ribosom_L1_bac-type.
    IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view]
    PfamiPF00687. Ribosomal_L1. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMiSSF56808. SSF56808. 1 hit.
    TIGRFAMsiTIGR01169. rplA_bact. 1 hit.
    PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B3QQS5-1 [UniParc]FASTAAdd to Basket

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    MAGKNYKNAA AKVDRAQEYE LAEAIEKVKE ITTTKFDATI DVAMKLGVDP    50
    RHADQVVRGT VMLPHGTGKT VSVLVVCKEN KAEEAREAGA DFVGFEDYIE 100
    KIQNGWTDVD VVVATPDVMG QLGKVARILG PRGLMPNPKS GTVTMDVAKA 150
    VSEVKAGKIE FRVDKAGNIH APVGKVSFDS DKLAGNIGSF IKEVVRLKPS 200
    AAKGQYLQGI TISSTMSPGV KVKKDKFVA 229
    Length:229
    Mass (Da):24,501
    Last modified:September 2, 2008 - v1
    Checksum:i13DFBF2092117C62
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001099 Genomic DNA. Translation: ACF12278.1.
    RefSeqiYP_001999478.1. NC_011027.1.

    Genome annotation databases

    EnsemblBacteriaiACF12278; ACF12278; Cpar_1886.
    GeneIDi6420833.
    KEGGicpc:Cpar_1886.
    PATRICi21367083. VBIChlPar72705_1889.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001099 Genomic DNA. Translation: ACF12278.1 .
    RefSeqi YP_001999478.1. NC_011027.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 517417.Cpar_1886.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACF12278 ; ACF12278 ; Cpar_1886 .
    GeneIDi 6420833.
    KEGGi cpc:Cpar_1886.
    PATRICi 21367083. VBIChlPar72705_1889.

    Phylogenomic databases

    eggNOGi COG0081.
    HOGENOMi HOG000207015.
    KOi K02863.
    OMAi MAGKKYR.
    OrthoDBi EOG6FBX2G.

    Enzyme and pathway databases

    BioCyci CPAR517417:GH95-1934-MONOMER.

    Family and domain databases

    Gene3Di 3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    HAMAPi MF_01318_B. Ribosomal_L1_B.
    InterProi IPR005878. Ribosom_L1_bac-type.
    IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view ]
    Pfami PF00687. Ribosomal_L1. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMi SSF56808. SSF56808. 1 hit.
    TIGRFAMsi TIGR01169. rplA_bact. 1 hit.
    PROSITEi PS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NCIB 8327Imported.

    Entry informationi

    Entry nameiB3QQS5_CHLP8
    AccessioniPrimary (citable) accession number: B3QQS5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3