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B3QKL9 (TYPH_RHOPT) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:Rpal_4625
OrganismRhodopseudomonas palustris (strain TIE-1) [Complete proteome] [HAMAP]
Taxonomic identifier395960 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length514 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 514514Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_1000132353

Sequences

Sequence LengthMass (Da)Tools
B3QKL9 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 245697DBC324B925

FASTA51454,652
        10         20         30         40         50         60 
MNAPDLTRPP LTIRRISLDT GRENVAVISR RSRALRPEVF RGFSRVELRI NSKVLLATLM 

        70         80         90        100        110        120 
ITDDDAMIGP DEVGLSEPAF RRFNEPVGSA VSVTPARSPA SLDAVRAKIQ GHTLSAAEIT 

       130        140        150        160        170        180 
AIVDDLAHFR YSDMEIAAFL ISAARFTTTD ELLALVGAMA SVGTKLTWDT PIVVDKHCIG 

       190        200        210        220        230        240 
GIPGNRTTMI VVPIVAAHGL MIPKTSSRAI TSPAGTADTM ELLARVDLDV EQMKQVVHAC 

       250        260        270        280        290        300 
GGCLVWGGHV NLSPADDILI SVERPLSLDT PEQMVASIMS KKLAAGSTRL LIDFPVGPSA 

       310        320        330        340        350        360 
KVTSANEAMR LRKLFEFVGD HFGISVEVVT TDGRQPIGRG IGPVLEARDV MAVLGNKPGA 

       370        380        390        400        410        420 
PADLREKSLR LAAHLLEYDP KLRGGTGYAR AKELLDSGAA LKKMQQIIDA QGPSPCPAEL 

       430        440        450        460        470        480 
GSYAADVLAA ADGVVNGIDC LRINRLARSA GAPVAKGAGI DLFKKIGDRV EKGEPLYRVY 

       490        500        510 
ASDRSEFDLA LAAAQAESGF AINHHTPADV DLVS 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris TIE-1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Emerson D., Newman D.K., Roden E., Richardson P.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TIE-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001096 Genomic DNA. Translation: ACF03116.1.
RefSeqYP_001993591.1. NC_011004.1.

3D structure databases

ProteinModelPortalB3QKL9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395960.Rpal_4625.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACF03116; ACF03116; Rpal_4625.
GeneID6412311.
KEGGrpt:Rpal_4625.
PATRIC23313781. VBIRhoPal88240_4678.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMALEWAFDE.
OrthoDBEOG61ZTGG.

Enzyme and pathway databases

BioCycRPAL395960:GHPC-4670-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_RHOPT
AccessionPrimary (citable) accession number: B3QKL9
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families