B3QH85 (B3QH85_RHOPT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV, B subunit EMBL ACF01274.1
EC=5.99.1.3 EMBL ACF01274.1

Gene names

Ordered Locus Names:

Rpal_2765

Organism

Rhodopseudomonas palustris (strain TIE-1) [Complete proteome] [HAMAP]

Taxonomic identifier

395960 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length	683 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3QH85 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: 3793E0448951068A	FASTA	683	74,378
	10 20 30 40 50 60 MAKALKASSK SKSGDDLFEG APKSAAPKAP AKPSGAEDGY TAADIEVLEG LEPVRRRPGM 70 80 90 100 110 120 YIGGTDEKAL HHLFAEVIDN SMDEALAGHA TFIEVELTAD GFLTVSDNGR GIPVDPHPKF 130 140 150 160 170 180 PKKSALEVIM CTLHAGGKFD SKVYETSGGL HGVGVSVVNA LSSRLEVEVA RGQQLHRMVF 190 200 210 220 230 240 ERGHPKGKLE SLGKVNNRRG TRVRFKPDTD IFGAKAAFKP QRLFKMARSK AYLFGGVKIR 250 260 270 280 290 300 WKCDPELLKG IEDVPAEDEF HFPGGLKDFL GAAIHNDTLV HPDIFAGKSG RNGAHGACEW 310 320 330 340 350 360 AVAWTADADG FLSSYCNTVP TPDGGTHESG LRSALLRGLK DHAERAGQGK RASSITSEDV 370 380 390 400 410 420 MVGAAIMLSV FVREPEFQGQ TKDRLATAEA QKIVEQAIKD PFDHWLSGNP VQANKLLDFV 430 440 450 460 470 480 IERAEERLRR RQEKEISRKT AVKKLRLPGK LADCTSTAAE GSELFIVEGD SAGGSAKQAR 490 500 510 520 530 540 DRSTQAVLPL RGKILNVASA GKDKVVANAQ LSDLIQALGV STGVNYREED LRYSRIIIMT 550 560 570 580 590 600 DADVDGAHIA SLLITFFYRQ MPKLIDEGHL YLAVPPLYRL THGAKTVYAR DDAHKEELLK 610 620 630 640 650 660 KEFNANAKVE VGRFKGLGEM MPAQLKETTM DPAKRTMLRV VLLPDDRDGT ANSVERLMGT 670 680 KAEARFAFIS EKAEFASDEL LDV

References

[1]

"Complete sequence of Rhodopseudomonas palustris TIE-1." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Emerson D., Newman D.K., Roden E., Richardson P. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TIE-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001096 Genomic DNA. Translation: ACF01274.1.
RefSeq	YP_001991749.1. NC_011004.1.
3D structure databases
ProteinModelPortal	B3QH85.
ModBase	Search...
Protein-protein interaction databases
STRING	B3QH85.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6410429.
GenomeReviews	Gene locus Rpal_2765 in contig CP001096_GR.
KEGG	rpt:Rpal_2765.
PATRIC	23309994. VBIRhoPal88240_2807.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3QH85_RHOPT

Accession

Primary (citable) accession number: B3QH85

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	January 25, 2012
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)