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B3QH48 (B3QH48_RHOPT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Ribonuclease, Rne/Rng family EMBL ACF01237.1
Gene names
Ordered Locus Names:Rpal_2728
OrganismRhodopseudomonas palustris (strain TIE-1) [Complete proteome] [HAMAP] EMBL ACF01237.1
Taxonomic identifier395960 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length1053 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processRNA processing

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

ribonuclease activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B3QH48 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 630391D431EEC8AE

FASTA1,053115,731
        10         20         30         40         50         60 
MANKMLIDAT HPEETRVVVV RGNRVEEFDF ETAQRKQLRG NIYLAKVTRV EPSLQAAFIE 

        70         80         90        100        110        120 
YGGNRHGFLA FSEIHPDYYQ IPVADRQALI EADERAHREA EEENEQRSSR RRSRHRSHRR 

       130        140        150        160        170        180 
RNNGERVQSE IVEAATDVAA EQPHEAADHH EAHEAGAHAE AERLMHELPE GETAEQHDAE 

       190        200        210        220        230        240 
YAADHEHTHV EAAPSEPQVS AAAEPVTIEQ PAAAEAPAPV EAPQAAASHD ETDAHDDDHG 

       250        260        270        280        290        300 
EDSANYAEDA PFPIDEHHEA EDEHEAHDDH VEGEHEVETD SDSDTEAEAE DDEEEDDEEE 

       310        320        330        340        350        360 
AEEDVVESVG GDDVLEEVPE RAFRPRRQYK IQEVIKRRQV MLVQVVKEER GNKGAALTTY 

       370        380        390        400        410        420 
LSLAGRYAVL MPNTARGGGI SRKITSAQDR SRLKEVVQDL DVPEGMGVIL RTAGASRTKP 

       430        440        450        460        470        480 
EIKRDFEYLI RMWETVRDVT LNSQAPKLVY EEGSLIKRSL RDLYNKEIDE VLVAGEAGYR 

       490        500        510        520        530        540 
EARDFMHMLM PSQVRAVKLY RDGQPLFSRM GVESQLDAMF SPTVQLRSGG YIVINQTEAL 

       550        560        570        580        590        600 
VSIDVNSGRS TREHHIEDTA LKTNMEAAEE VARQLRLRDL AGLIVIDFID MDEKRNNRAV 

       610        620        630        640        650        660 
ERKLSDCLRQ DRARIQVGRI SHFGLLEMSR QRIRASVLES STEPCPHCGG SGHVRSVSSV 

       670        680        690        700        710        720 
ALQLLRGLEE VLMKGATHNL IVRTRTDVAL YVLNHKRGHL RDLETGFRVS LSVLADPTVS 

       730        740        750        760        770        780 
GQQSFVIDRG EQVHTLETAK ALLAAQIAAS PAPLDEPEDD DGYDFEAEIE TDETVGLAED 

       790        800        810        820        830        840 
QGSEAGESES EGRKRRRRRR RRRSGEPREA AEAGAVGEDG EQPFVSEGVE QVGEADEGDE 

       850        860        870        880        890        900 
AGEDDSDAEA RADQGENGER RPRRRGRRGG RRRRGNAEAG ENEAGVVGSI SDELSPTDEA 

       910        920        930        940        950        960 
EAADAVADFD GGSPSVQPSF EPAAEAEQPH DAPPHDIVPS EPQHTAATAA PDTSDPSAED 

       970        980        990       1000       1010       1020 
DSAAKKAARR RSTVREKVSF GASAAASETT AEAAAEVQPE PTAQAEQPAT AAPAVEAPAA 

      1030       1040       1050 
EAAPQAAAQP AEEPSSAAPR RVGWWSRRFG GGN

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References

[1]"Complete sequence of Rhodopseudomonas palustris TIE-1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Emerson D., Newman D.K., Roden E., Richardson P.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TIE-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001096 Genomic DNA. Translation: ACF01237.1.
RefSeqYP_001991712.1. NC_011004.1.

3D structure databases

ProteinModelPortalB3QH48.
SMRB3QH48. Positions 36-80.
ModBaseSearch...

Protein-protein interaction databases

STRING395960.Rpal_2728.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACF01237; ACF01237; Rpal_2728.
GeneID6410392.
KEGGrpt:Rpal_2728.
PATRIC23309912. VBIRhoPal88240_2766.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1530.
HOGENOMHOG000258026.
KOK08300.
OMAMGIILRT.
ProtClustDBCLSK819408.

Enzyme and pathway databases

BioCycRPAL395960:GHPC-2750-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 2 hits.
InterProIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR022967. RNA-binding_domain_S1.
IPR004659. RNase_E/G.
[Graphical view]
PfamPF10150. RNase_E_G. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTSM00316. S1. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR00757. RNaseEG. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB3QH48_RHOPT
AccessionPrimary (citable) accession number: B3QH48
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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