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B3QGJ0

- B3QGJ0_RHOPT

UniProt

B3QGJ0 - B3QGJ0_RHOPT

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Protein
Submitted name: DNA ligase D
Gene
Rpal_4171
Organism
Rhodopseudomonas palustris (strain TIE-1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL395960:GHPC-4214-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rpal_4171Imported
OrganismiRhodopseudomonas palustris (strain TIE-1)Imported
Taxonomic identifieri395960 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001725: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395960.Rpal_4171.

Structurei

3D structure databases

ProteinModelPortaliB3QGJ0.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3QGJ0-1 [UniParc]FASTAAdd to Basket

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MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR    50
LEYGGVFKSW AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
GTVQLWDRGY WECDDPERGF KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG 150
KRTNWLLIKH RDDDAREGGA NTVLDDDRSV ASGRAMETIA EGKGKAPKPF 200
MLRKAAAKVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP KTSAKAKAAK 250
SAKPASRSKL AAQGQRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR 300
MQLRVEHGEA RLLTRKGLDW TAKFSAIADE AASLPDSIID TEVVALDSHG 350
QPDFAALQAA LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL 400
KAARGRRKEG LIRYVEHFDT GGDAILQSAC KLSLEGIVSK KLDAAYRSGR 450
SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL LVGVHRGDVL AYVGIVGTGF 500
GQDVVKRILP ELKAHKADTS PFSGANAPKK TRELHWATPD LVAEIEFAGF 550
TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VEVAEPALKR RTAKASKSGK 600
PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA 650
EVGDWLIPHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD 700
RKPYVQIDRV EGLIAAAQIG GVELHPWNCA PNRYDVPGRL VFDLDPAPEV 750
GFDEVITAAK EMKLRLETLG LATFCKTTGG KGLHVVVPLK PDDGIDWKAA 800
KTFAQTVCAQ MAEDSPEQYL LNMSKQKRIG KIFLDYLRND RMSTAVAVLS 850
PRARTGATVS MPLTWSQVKA GLDPKRYTIK SVPALMKRSK AWADYDDAAA 900
PLKAAIKTLT SGKT 914
Length:914
Mass (Da):99,721
Last modified:September 2, 2008 - v1
Checksum:i1836579649F310E3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001096 Genomic DNA. Translation: ACF02667.1.
RefSeqiYP_001993142.1. NC_011004.1.

Genome annotation databases

EnsemblBacteriaiACF02667; ACF02667; Rpal_4171.
GeneIDi6411855.
KEGGirpt:Rpal_4171.
PATRICi23312845. VBIRhoPal88240_4213.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001096 Genomic DNA. Translation: ACF02667.1 .
RefSeqi YP_001993142.1. NC_011004.1.

3D structure databases

ProteinModelPortali B3QGJ0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395960.Rpal_4171.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACF02667 ; ACF02667 ; Rpal_4171 .
GeneIDi 6411855.
KEGGi rpt:Rpal_4171.
PATRICi 23312845. VBIRhoPal88240_4213.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RPAL395960:GHPC-4214-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TIE-1Imported.

Entry informationi

Entry nameiB3QGJ0_RHOPT
AccessioniPrimary (citable) accession number: B3QGJ0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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