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B3QGJ0

- B3QGJ0_RHOPT

UniProt

B3QGJ0 - B3QGJ0_RHOPT

Protein
Submitted name:

DNA ligase D

Gene

Rpal_4171

Organism
Rhodopseudomonas palustris (strain TIE-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (02 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRPAL395960:GHPC-4214-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Rpal_4171Imported
    OrganismiRhodopseudomonas palustris (strain TIE-1)Imported
    Taxonomic identifieri395960 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001725: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi395960.Rpal_4171.

    Structurei

    3D structure databases

    ProteinModelPortaliB3QGJ0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B3QGJ0-1 [UniParc]FASTAAdd to Basket

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    MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR    50
    LEYGGVFKSW AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVQLWDRGY WECDDPERGF KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG 150
    KRTNWLLIKH RDDDAREGGA NTVLDDDRSV ASGRAMETIA EGKGKAPKPF 200
    MLRKAAAKVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP KTSAKAKAAK 250
    SAKPASRSKL AAQGQRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR 300
    MQLRVEHGEA RLLTRKGLDW TAKFSAIADE AASLPDSIID TEVVALDSHG 350
    QPDFAALQAA LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL 400
    KAARGRRKEG LIRYVEHFDT GGDAILQSAC KLSLEGIVSK KLDAAYRSGR 450
    SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL LVGVHRGDVL AYVGIVGTGF 500
    GQDVVKRILP ELKAHKADTS PFSGANAPKK TRELHWATPD LVAEIEFAGF 550
    TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VEVAEPALKR RTAKASKSGK 600
    PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA 650
    EVGDWLIPHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD 700
    RKPYVQIDRV EGLIAAAQIG GVELHPWNCA PNRYDVPGRL VFDLDPAPEV 750
    GFDEVITAAK EMKLRLETLG LATFCKTTGG KGLHVVVPLK PDDGIDWKAA 800
    KTFAQTVCAQ MAEDSPEQYL LNMSKQKRIG KIFLDYLRND RMSTAVAVLS 850
    PRARTGATVS MPLTWSQVKA GLDPKRYTIK SVPALMKRSK AWADYDDAAA 900
    PLKAAIKTLT SGKT 914
    Length:914
    Mass (Da):99,721
    Last modified:September 2, 2008 - v1
    Checksum:i1836579649F310E3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001096 Genomic DNA. Translation: ACF02667.1.
    RefSeqiYP_001993142.1. NC_011004.1.

    Genome annotation databases

    EnsemblBacteriaiACF02667; ACF02667; Rpal_4171.
    GeneIDi6411855.
    KEGGirpt:Rpal_4171.
    PATRICi23312845. VBIRhoPal88240_4213.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001096 Genomic DNA. Translation: ACF02667.1 .
    RefSeqi YP_001993142.1. NC_011004.1.

    3D structure databases

    ProteinModelPortali B3QGJ0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395960.Rpal_4171.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACF02667 ; ACF02667 ; Rpal_4171 .
    GeneIDi 6411855.
    KEGGi rpt:Rpal_4171.
    PATRICi 23312845. VBIRhoPal88240_4213.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RPAL395960:GHPC-4214-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TIE-1Imported.

    Entry informationi

    Entry nameiB3QGJ0_RHOPT
    AccessioniPrimary (citable) accession number: B3QGJ0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3