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B3QGJ0

- B3QGJ0_RHOPT

UniProt

B3QGJ0 - B3QGJ0_RHOPT

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Protein
Submitted name:

DNA ligase D

Gene

Rpal_4171

Organism
Rhodopseudomonas palustris (strain TIE-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL395960:GHPC-4214-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rpal_4171Imported
OrganismiRhodopseudomonas palustris (strain TIE-1)Imported
Taxonomic identifieri395960 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001725: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395960.Rpal_4171.

Structurei

3D structure databases

ProteinModelPortaliB3QGJ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3QGJ0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR
60 70 80 90 100
LEYGGVFKSW AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVQLWDRGY WECDDPERGF KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG
160 170 180 190 200
KRTNWLLIKH RDDDAREGGA NTVLDDDRSV ASGRAMETIA EGKGKAPKPF
210 220 230 240 250
MLRKAAAKVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP KTSAKAKAAK
260 270 280 290 300
SAKPASRSKL AAQGQRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR
310 320 330 340 350
MQLRVEHGEA RLLTRKGLDW TAKFSAIADE AASLPDSIID TEVVALDSHG
360 370 380 390 400
QPDFAALQAA LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL
410 420 430 440 450
KAARGRRKEG LIRYVEHFDT GGDAILQSAC KLSLEGIVSK KLDAAYRSGR
460 470 480 490 500
SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL LVGVHRGDVL AYVGIVGTGF
510 520 530 540 550
GQDVVKRILP ELKAHKADTS PFSGANAPKK TRELHWATPD LVAEIEFAGF
560 570 580 590 600
TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VEVAEPALKR RTAKASKSGK
610 620 630 640 650
PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA
660 670 680 690 700
EVGDWLIPHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD
710 720 730 740 750
RKPYVQIDRV EGLIAAAQIG GVELHPWNCA PNRYDVPGRL VFDLDPAPEV
760 770 780 790 800
GFDEVITAAK EMKLRLETLG LATFCKTTGG KGLHVVVPLK PDDGIDWKAA
810 820 830 840 850
KTFAQTVCAQ MAEDSPEQYL LNMSKQKRIG KIFLDYLRND RMSTAVAVLS
860 870 880 890 900
PRARTGATVS MPLTWSQVKA GLDPKRYTIK SVPALMKRSK AWADYDDAAA
910
PLKAAIKTLT SGKT
Length:914
Mass (Da):99,721
Last modified:September 2, 2008 - v1
Checksum:i1836579649F310E3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001096 Genomic DNA. Translation: ACF02667.1.
RefSeqiYP_001993142.1. NC_011004.1.

Genome annotation databases

EnsemblBacteriaiACF02667; ACF02667; Rpal_4171.
GeneIDi6411855.
KEGGirpt:Rpal_4171.
PATRICi23312845. VBIRhoPal88240_4213.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001096 Genomic DNA. Translation: ACF02667.1 .
RefSeqi YP_001993142.1. NC_011004.1.

3D structure databases

ProteinModelPortali B3QGJ0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395960.Rpal_4171.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACF02667 ; ACF02667 ; Rpal_4171 .
GeneIDi 6411855.
KEGGi rpt:Rpal_4171.
PATRICi 23312845. VBIRhoPal88240_4213.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RPAL395960:GHPC-4214-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TIE-1Imported.

Entry informationi

Entry nameiB3QGJ0_RHOPT
AccessioniPrimary (citable) accession number: B3QGJ0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: October 1, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3