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B3QFM6 (B3QFM6_RHOPT) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
D-alanine--D-alanine ligase EMBL ACF02539.1
EC=6.3.2.4 EMBL ACF02539.1
Gene names
Ordered Locus Names:Rpal_4043
OrganismRhodopseudomonas palustris (strain TIE-1) [Complete proteome] [HAMAP] EMBL ACF02539.1
Taxonomic identifier395960 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length329 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS000291

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS000291

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS000291

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS000291

Subcellular location

Cytoplasm By similarity SAAS SAAS000291.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS000291

Sequences

Sequence LengthMass (Da)Tools
B3QFM6 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: DF745BEEAD7D5D64

FASTA32935,020
        10         20         30         40         50         60 
MRHTILFGGT SKERLVSVAS AQALHSALPD ADLWFWNDDD CVHAVSAQAL LAHARPFEEA 

        70         80         90        100        110        120 
FVPDGEDIGP LETALDRAAA EQRLLVLGLH GGVAENGELQ AMCELRRVPF TGSGSAASHL 

       130        140        150        160        170        180 
AFDKVAAKRF ASIAGVRTVT GIALADAEAA LEAHGRLIAK PACDGSSYGL FFINAKQDLV 

       190        200        210        220        230        240 
AVRHAAKTED YLIEPFVAGV EATCGVLEAE DGSLRALPPI EIVPADGGFD YTAKYLAKST 

       250        260        270        280        290        300 
QEICPGRFAP EIASAIMDYA VRAHRVMSCR GYSRSDFIVG KDGPIFLETN TLPGLTKASL 

       310        320 
YPKALNALGI PFVDFLRGQI ALAERAVRS

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris TIE-1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Emerson D., Newman D.K., Roden E., Richardson P.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TIE-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001096 Genomic DNA. Translation: ACF02539.1.
RefSeqYP_001993014.1. NC_011004.1.

3D structure databases

ProteinModelPortalB3QFM6.
ModBaseSearch...

Protein-protein interaction databases

STRING395960.Rpal_4043.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACF02539; ACF02539; Rpal_4043.
GeneID6411726.
KEGGrpt:Rpal_4043.
PATRIC23312581. VBIRhoPal88240_4081.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1181.
HOGENOMHOG000011592.
KOK01921.
OMAGELQAMC.
ProtClustDBCLSK911593.

Enzyme and pathway databases

BioCycRPAL395960:GHPC-4085-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3QFM6_RHOPT
AccessionPrimary (citable) accession number: B3QFM6
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 29, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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