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Protein
Submitted name:

Cupin 2 conserved barrel domain protein

Gene

Rpal_2463

Organism
Rhodopseudomonas palustris (strain TIE-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi76 – 761ManganeseCombined sources
Metal bindingi78 – 781Manganese; via tele nitrogenCombined sources
Metal bindingi82 – 821Manganese; via tele nitrogenCombined sources
Metal bindingi116 – 1161Manganese; via tele nitrogenCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

ManganeseCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciRPAL395960:GHPC-2483-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Cupin 2 conserved barrel domain proteinImported
Gene namesi
Ordered Locus Names:Rpal_2463Imported
OrganismiRhodopseudomonas palustris (strain TIE-1)Imported
Taxonomic identifieri395960 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001725 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3KGZX-ray1.85A/B20-165[»]
ProteinModelPortaliB3QER1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiB3QER1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini64 – 12461Cupin_2InterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000230275.
OMAiWHQFRAN.
OrthoDBiEOG64BQ6J.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR013096. Cupin_2.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF07883. Cupin_2. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.

Sequencei

Sequence statusi: Complete.

B3QER1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANDNAAAPH PAAGERVGVR AQTAPGRWDG VAVMPYKQTA EAPFQDVSRQ
60 70 80 90 100
LLFADPNLAC EWRYFEVDEG GYSTLERHAH VHAVMIHRGH GQCLVGETIS
110 120 130 140 150
DVAQGDLVFI PPMTWHQFRA NRGDCLGFLC VVNAARDRPQ LPTADDLAEL
160
RKDERIADFI RTGGE
Length:165
Mass (Da):18,221
Last modified:September 2, 2008 - v1
Checksum:iEC0C89B6D3877A68
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001096 Genomic DNA. Translation: ACF00977.1.
RefSeqiWP_012495726.1. NC_011004.1.

Genome annotation databases

EnsemblBacteriaiACF00977; ACF00977; Rpal_2463.
KEGGirpt:Rpal_2463.
PATRICi23309372. VBIRhoPal88240_2498.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001096 Genomic DNA. Translation: ACF00977.1.
RefSeqiWP_012495726.1. NC_011004.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3KGZX-ray1.85A/B20-165[»]
ProteinModelPortaliB3QER1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

DNASUi6410125.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACF00977; ACF00977; Rpal_2463.
KEGGirpt:Rpal_2463.
PATRICi23309372. VBIRhoPal88240_2498.

Phylogenomic databases

HOGENOMiHOG000230275.
OMAiWHQFRAN.
OrthoDBiEOG64BQ6J.

Enzyme and pathway databases

BioCyciRPAL395960:GHPC-2483-MONOMER.

Miscellaneous databases

EvolutionaryTraceiB3QER1.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR013096. Cupin_2.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF07883. Cupin_2. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TIE-1Imported.
  2. "Crystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris."
    Bonanno J.B., Freeman J., Bain K.T., Do J., Romero R., Wasserman S., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (OCT-2009) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) OF 20-165 IN COMPLEX WITH MANGANESE.

Entry informationi

Entry nameiB3QER1_RHOPT
AccessioniPrimary (citable) accession number: B3QER1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: March 16, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.