B3QBX8 (B3QBX8_RHOPT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP MF_01369 RuleBase RU003935

Gene names

Name:	rplW HAMAP MF_01369
Ordered Locus Names:	Rpal_3665

Organism

Rhodopseudomonas palustris (strain TIE-1) [Complete proteome] [HAMAP]

Taxonomic identifier

395960 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length	99 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP MF_01369 RuleBase RU003934

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01369 RuleBase RU003935
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01369 RuleBase RU003934 EMBL ACF02165.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3QBX8 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: 80389AD1DC3FCB27	FASTA	99	10,909
	10 20 30 40 50 60 MKSIDPRHYD VIVAPVVTEK STMASEHNKV VFKVQGGATK PQIKEAVEKL FDVKVKSVNT 70 80 90 LVRKGKTKAF RGTFGTQSDV KRAVVTLEEG HRIDVTTGL

References

[1]

"Complete sequence of Rhodopseudomonas palustris TIE-1." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Emerson D., Newman D.K., Roden E., Richardson P. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TIE-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001096 Genomic DNA. Translation: ACF02165.1.
RefSeq	YP_001992640.1. NC_011004.1.
3D structure databases
ProteinModelPortal	B3QBX8.
ModBase	Search...
Protein-protein interaction databases
STRING	B3QBX8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6411341.
GenomeReviews	Gene locus Rpal_3665 in contig CP001096_GR.
KEGG	rpt:Rpal_3665.
PATRIC	23311829. VBIRhoPal88240_3711.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG439330.
OMA	WKKAYVS.
ProtClustDB	PRK05738.
Family and domain databases
HAMAP	MF_01369_B. Ribosomal_L23_B. [Tree]
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR001014. Ribosomal_L23/L25_CS. IPR013025. Ribosomal_L25/23. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit.
KO	K02892.
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3QBX8_RHOPT

Accession

Primary (citable) accession number: B3QBX8

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)