B3Q9H2 (B3Q9H2_RHOPT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, LysR family EMBL ACF00444.1
EC=4.2.1.1 EMBL ACF00444.1

Gene names

Ordered Locus Names:

Rpal_1921

Organism

Rhodopseudomonas palustris (strain TIE-1) [Complete proteome] [HAMAP] EMBL ACF00444.1

Taxonomic identifier

395960 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas › Rhodopseudomonas palustris

Protein attributes

Sequence length	305 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lysR-type DNA-binding domain. SAAS SAAS005119

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS005119
Ligand	DNA-binding SAAS SAAS005119
Molecular function	Lyase EMBL ACF00444.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW carbonate dehydratase activity Inferred from electronic annotation. Source: EC sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3Q9H2 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: 4DBC90671A16542C	FASTA	305	32,639
	10 20 30 40 50 60 MDRLDTMTAF VAVADLQGFA PAARKLGLSP SAVTRMVAAL EERLGTRLLQ RTTRSVALTD 70 80 90 100 110 120 TGVRYLERVR RILADVEEAD TSAAAERIIP SGRLVVSAPV GFGRRHVAPL LSDYLRRYPE 130 140 150 160 170 180 VTGELRLSDL MINLVEDGVD CAVRIGHLSD SSLVARQLGA MRRIVVASPA YLAARGIPAT 190 200 210 220 230 240 PAEIAAHDVI HFGQTGAPVG WHFVVDGRDV RIACTPRLVS NVADVAILDA ERGGGLTRVL 250 260 270 280 290 300 AYQAADAIAA GRLQIVLATY EVPPLPIAIV YPTSRLLSAK VRAFIDLAAE TSDWRFGGDG KRSGA

References

[1]

"Complete sequence of Rhodopseudomonas palustris TIE-1." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Emerson D., Newman D.K., Roden E., Richardson P. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TIE-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001096 Genomic DNA. Translation: ACF00444.1.
RefSeq	YP_001990919.1. NC_011004.1.
3D structure databases
ProteinModelPortal	B3Q9H2.
ModBase	Search...
Protein-protein interaction databases
STRING	395960.Rpal_1921.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACF00444; ACF00444; Rpal_1921.
GeneID	6409581.
KEGG	rpt:Rpal_1921.
PATRIC	23308281. VBIRhoPal88240_1955.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0583.
HOGENOM	HOG000233519.
OMA	DRIDAMQ.
ProtClustDB	CLSK820633.
Enzyme and pathway databases
BioCyc	RPAL395960:GHPC-1939-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR005119. LysR_subst-bd. IPR000847. Tscrpt_reg_HTH_LysR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00126. HTH_1. 1 hit. PF03466. LysR_substrate. 1 hit. [Graphical view]
PROSITE	PS50931. HTH_LYSR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3Q9H2_RHOPT

Accession

Primary (citable) accession number: B3Q9H2

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)