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B3Q3D5

- B3Q3D5_RHIE6

UniProt

B3Q3D5 - B3Q3D5_RHIE6

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Protein
RNA polymerase sigma factor
Gene
RHECIAT_PC0000614
Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciRETL491916:GH4T-5032-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Ordered Locus Names:RHECIAT_PC0000614Imported
Encoded oniPlasmid pCImported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817: Plasmid pC

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_PC0000614.

Structurei

3D structure databases

ProteinModelPortaliB3Q3D5.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
KOiK03088.
OMAiPFDGARC.
OrthoDBiEOG6MM1S3.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3Q3D5-1 [UniParc]FASTAAdd to Basket

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MTAIPVPVTR HRPLLSALAD ADLLPLAKIG DEVAIRAIIQ RHNQRLFRTA    50
RAVIRNDAEA EDVVQASYIK AFASLSAFRG EAELSTWLTR ITLNEALGRV 100
RAQKNTTGLE EIDMQATSAG GQVVQFPSSL SATDPETELS RSQARQLLEQ 150
AVDELPDDFR AIFVLRDVEG MSTDEAASYL GIRPETAKTR LHRARKMMRQ 200
SIEKRLSGAF SALFPFDGAR CAFMADRVVA ALRQTS 236
Length:236
Mass (Da):26,040
Last modified:September 2, 2008 - v1
Checksum:i316597E2F657C8CA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001077 Genomic DNA. Translation: ACE94692.1.
RefSeqiYP_001985242.1. NC_010997.1.

Genome annotation databases

EnsemblBacteriaiACE94692; ACE94692; RHECIAT_PC0000614.
GeneIDi6403501.
KEGGirec:RHECIAT_PC0000614.
PATRICi23104308. VBIRhiEtl120572_5364.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001077 Genomic DNA. Translation: ACE94692.1 .
RefSeqi YP_001985242.1. NC_010997.1.

3D structure databases

ProteinModelPortali B3Q3D5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 491916.RHECIAT_PC0000614.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACE94692 ; ACE94692 ; RHECIAT_PC0000614 .
GeneIDi 6403501.
KEGGi rec:RHECIAT_PC0000614.
PATRICi 23104308. VBIRhiEtl120572_5364.

Phylogenomic databases

eggNOGi COG1595.
HOGENOMi HOG000094755.
KOi K03088.
OMAi PFDGARC.
OrthoDBi EOG6MM1S3.

Enzyme and pathway databases

BioCyci RETL491916:GH4T-5032-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
PROSITEi PS01063. SIGMA70_ECF. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CIAT 652Imported.
    Plasmid: pC

Entry informationi

Entry nameiB3Q3D5_RHIE6
AccessioniPrimary (citable) accession number: B3Q3D5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: September 3, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported

External Data

Dasty 3

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