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Protein

RNA polymerase sigma factor

Gene

RHECIAT_PC0000614

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciRETL491916:GH4T-5032-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Ordered Locus Names:RHECIAT_PC0000614Imported
Encoded oniPlasmid pCImported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817 Componenti: Plasmid pC

Structurei

3D structure databases

ProteinModelPortaliB3Q3D5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
KOiK03088.
OMAiFMLRAVE.
OrthoDBiEOG6MM1S3.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3Q3D5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAIPVPVTR HRPLLSALAD ADLLPLAKIG DEVAIRAIIQ RHNQRLFRTA
60 70 80 90 100
RAVIRNDAEA EDVVQASYIK AFASLSAFRG EAELSTWLTR ITLNEALGRV
110 120 130 140 150
RAQKNTTGLE EIDMQATSAG GQVVQFPSSL SATDPETELS RSQARQLLEQ
160 170 180 190 200
AVDELPDDFR AIFVLRDVEG MSTDEAASYL GIRPETAKTR LHRARKMMRQ
210 220 230
SIEKRLSGAF SALFPFDGAR CAFMADRVVA ALRQTS
Length:236
Mass (Da):26,040
Last modified:September 2, 2008 - v1
Checksum:i316597E2F657C8CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001077 Genomic DNA. Translation: ACE94692.1.
RefSeqiWP_012490100.1. NC_010997.1.

Genome annotation databases

EnsemblBacteriaiACE94692; ACE94692; RHECIAT_PC0000614.
KEGGirec:RHECIAT_PC0000614.
PATRICi23104308. VBIRhiEtl120572_5364.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001077 Genomic DNA. Translation: ACE94692.1.
RefSeqiWP_012490100.1. NC_010997.1.

3D structure databases

ProteinModelPortaliB3Q3D5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACE94692; ACE94692; RHECIAT_PC0000614.
KEGGirec:RHECIAT_PC0000614.
PATRICi23104308. VBIRhiEtl120572_5364.

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
KOiK03088.
OMAiFMLRAVE.
OrthoDBiEOG6MM1S3.

Enzyme and pathway databases

BioCyciRETL491916:GH4T-5032-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiB3Q3D5_RHIE6
AccessioniPrimary (citable) accession number: B3Q3D5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: July 22, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.