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B3Q3D5

- B3Q3D5_RHIE6

UniProt

B3Q3D5 - B3Q3D5_RHIE6

Protein

RNA polymerase sigma factor

Gene

RHECIAT_PC0000614

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (02 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciRETL491916:GH4T-5032-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA polymerase sigma factorUniRule annotation
    Gene namesi
    Ordered Locus Names:RHECIAT_PC0000614Imported
    Encoded oniPlasmid pCImported
    OrganismiRhizobium etli (strain CIAT 652)Imported
    Taxonomic identifieri491916 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000008817: Plasmid pC

    Interactioni

    Protein-protein interaction databases

    STRINGi491916.RHECIAT_PC0000614.

    Structurei

    3D structure databases

    ProteinModelPortaliB3Q3D5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1595.
    HOGENOMiHOG000094755.
    KOiK03088.
    OMAiPFDGARC.
    OrthoDBiEOG6MM1S3.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
    PROSITEiPS01063. SIGMA70_ECF. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B3Q3D5-1 [UniParc]FASTAAdd to Basket

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    MTAIPVPVTR HRPLLSALAD ADLLPLAKIG DEVAIRAIIQ RHNQRLFRTA    50
    RAVIRNDAEA EDVVQASYIK AFASLSAFRG EAELSTWLTR ITLNEALGRV 100
    RAQKNTTGLE EIDMQATSAG GQVVQFPSSL SATDPETELS RSQARQLLEQ 150
    AVDELPDDFR AIFVLRDVEG MSTDEAASYL GIRPETAKTR LHRARKMMRQ 200
    SIEKRLSGAF SALFPFDGAR CAFMADRVVA ALRQTS 236
    Length:236
    Mass (Da):26,040
    Last modified:September 2, 2008 - v1
    Checksum:i316597E2F657C8CA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001077 Genomic DNA. Translation: ACE94692.1.
    RefSeqiYP_001985242.1. NC_010997.1.

    Genome annotation databases

    EnsemblBacteriaiACE94692; ACE94692; RHECIAT_PC0000614.
    GeneIDi6403501.
    KEGGirec:RHECIAT_PC0000614.
    PATRICi23104308. VBIRhiEtl120572_5364.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001077 Genomic DNA. Translation: ACE94692.1 .
    RefSeqi YP_001985242.1. NC_010997.1.

    3D structure databases

    ProteinModelPortali B3Q3D5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 491916.RHECIAT_PC0000614.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACE94692 ; ACE94692 ; RHECIAT_PC0000614 .
    GeneIDi 6403501.
    KEGGi rec:RHECIAT_PC0000614.
    PATRICi 23104308. VBIRhiEtl120572_5364.

    Phylogenomic databases

    eggNOGi COG1595.
    HOGENOMi HOG000094755.
    KOi K03088.
    OMAi PFDGARC.
    OrthoDBi EOG6MM1S3.

    Enzyme and pathway databases

    BioCyci RETL491916:GH4T-5032-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    PROSITEi PS01063. SIGMA70_ECF. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome diversity and DNA divergence of Rhizobium etli."
      Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiB3Q3D5_RHIE6
    AccessioniPrimary (citable) accession number: B3Q3D5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3