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Protein

RNA polymerase sigma factor

Gene

RHECIAT_PC0000614

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Ordered Locus Names:RHECIAT_PC0000614Imported
Encoded oniPlasmid pCImported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
Proteomesi
  • UP000008817 Componenti: Plasmid pC

Structurei

3D structure databases

ProteinModelPortaliB3Q3D5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini39 – 105Sigma70_r2InterPro annotationAdd BLAST67
Domaini145 – 198Sigma70_r4_2InterPro annotationAdd BLAST54

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000094755
KOiK03088
OMAiAVTTWLH
OrthoDBiPOG091H04ZH

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000838 RNA_pol_sigma70_ECF_CS
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS01063 SIGMA70_ECF, 1 hit

Sequencei

Sequence statusi: Complete.

B3Q3D5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAIPVPVTR HRPLLSALAD ADLLPLAKIG DEVAIRAIIQ RHNQRLFRTA
60 70 80 90 100
RAVIRNDAEA EDVVQASYIK AFASLSAFRG EAELSTWLTR ITLNEALGRV
110 120 130 140 150
RAQKNTTGLE EIDMQATSAG GQVVQFPSSL SATDPETELS RSQARQLLEQ
160 170 180 190 200
AVDELPDDFR AIFVLRDVEG MSTDEAASYL GIRPETAKTR LHRARKMMRQ
210 220 230
SIEKRLSGAF SALFPFDGAR CAFMADRVVA ALRQTS
Length:236
Mass (Da):26,040
Last modified:September 2, 2008 - v1
Checksum:i316597E2F657C8CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001077 Genomic DNA Translation: ACE94692.1
RefSeqiWP_012490100.1, NC_010997.1

Genome annotation databases

EnsemblBacteriaiACE94692; ACE94692; RHECIAT_PC0000614
KEGGirec:RHECIAT_PC0000614

Similar proteinsi

Entry informationi

Entry nameiB3Q3D5_RHIE6
AccessioniPrimary (citable) accession number: B3Q3D5
Entry historyiIntegrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: April 25, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported
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Main funding by: National Institutes of Health