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B3Q3D5 (B3Q3D5_RHIE6) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000716
Gene names
Ordered Locus Names:RHECIAT_PC0000614 EMBL ACE94692.1
Encoded onPlasmid pC Ref.1 EMBL ACE94692.1
OrganismRhizobium etli (strain CIAT 652) [Complete proteome] [HAMAP] EMBL ACE94692.1
Taxonomic identifier491916 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Sequences

Sequence LengthMass (Da)Tools
B3Q3D5 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 316597E2F657C8CA

FASTA23626,040
        10         20         30         40         50         60 
MTAIPVPVTR HRPLLSALAD ADLLPLAKIG DEVAIRAIIQ RHNQRLFRTA RAVIRNDAEA 

        70         80         90        100        110        120 
EDVVQASYIK AFASLSAFRG EAELSTWLTR ITLNEALGRV RAQKNTTGLE EIDMQATSAG 

       130        140        150        160        170        180 
GQVVQFPSSL SATDPETELS RSQARQLLEQ AVDELPDDFR AIFVLRDVEG MSTDEAASYL 

       190        200        210        220        230 
GIRPETAKTR LHRARKMMRQ SIEKRLSGAF SALFPFDGAR CAFMADRVVA ALRQTS 

« Hide

References

[1]"Genome diversity and DNA divergence of Rhizobium etli."
Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CIAT 652 EMBL ACE94692.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001077 Genomic DNA. Translation: ACE94692.1.
RefSeqYP_001985242.1. NC_010997.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING491916.RHECIAT_PC0000614.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACE94692; ACE94692; RHECIAT_PC0000614.
GeneID6403501.
KEGGrec:RHECIAT_PC0000614.
PATRIC23104308. VBIRhiEtl120572_5364.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1595.
HOGENOMHOG000094755.
KOK03088.
OMAPFDGARC.
OrthoDBEOG6MM1S3.

Enzyme and pathway databases

BioCycRETL491916:GH4T-5032-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02937. sigma70-ECF. 1 hit.
PROSITEPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3Q3D5_RHIE6
AccessionPrimary (citable) accession number: B3Q3D5
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)