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B3Q1I4

- B3Q1I4_RHIE6

UniProt

B3Q1I4 - B3Q1I4_RHIE6

Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

RHECIAT_PA0000196

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (02 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRETL491916:GH4T-5984-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligase proteinImported
    Gene namesi
    Ordered Locus Names:RHECIAT_PA0000196Imported
    Encoded oniPlasmid pAImported
    OrganismiRhizobium etli (strain CIAT 652)Imported
    Taxonomic identifieri491916 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000008817: Plasmid pA

    Interactioni

    Protein-protein interaction databases

    STRINGi491916.RHECIAT_PA0000196.

    Structurei

    3D structure databases

    ProteinModelPortaliB3Q1I4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiLEHACHH.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B3Q1I4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTRPRQPSAP LLRESSSSIQ SRPVRRRDPA QPSLPFDAMP TRVEPCLALL    50
    KQTVPQGPDW IYEVKWDGYR LAIHIEPKGI RILTRGGHDW THRFPTIAAG 100
    ASALGVSSCI LDGEAVVLDE EGRSDFGALQ RSLGGRGGKR VSTESIFCAF 150
    DLLYLDGHDL TRTELSVRRH LLQDLIPGTD EGAIRFSQEL DLSGEDLLEH 200
    ACHLGLEGII AKRGDRPYRS GRLGDWQKIK CVQSDSFMIV GYEESASTRG 250
    GLGSLLLAGR KGQDWIYVGS VGTGFNREEA EYLRKTLNRL QTKKPVVPLK 300
    GKRLVFSQPT LIAEIEFRGW TREGSLRHAS YKGLREIQDN AAVFDMTDGP 350
    AAIR 354
    Length:354
    Mass (Da):39,303
    Last modified:September 2, 2008 - v1
    Checksum:i39F43B6F04C3826C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001075 Genomic DNA. Translation: ACE93540.1.
    RefSeqiWP_012490576.1. NC_010998.1.
    YP_001985803.1. NC_010998.1.

    Genome annotation databases

    EnsemblBacteriaiACE93540; ACE93540; RHECIAT_PA0000196.
    GeneIDi6404072.
    KEGGirec:RHECIAT_PA0000196.
    PATRICi23105440. VBIRhiEtl120572_5929.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001075 Genomic DNA. Translation: ACE93540.1 .
    RefSeqi WP_012490576.1. NC_010998.1.
    YP_001985803.1. NC_010998.1.

    3D structure databases

    ProteinModelPortali B3Q1I4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 491916.RHECIAT_PA0000196.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACE93540 ; ACE93540 ; RHECIAT_PA0000196 .
    GeneIDi 6404072.
    KEGGi rec:RHECIAT_PA0000196.
    PATRICi 23105440. VBIRhiEtl120572_5929.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi LEHACHH.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RETL491916:GH4T-5984-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome diversity and DNA divergence of Rhizobium etli."
      Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiB3Q1I4_RHIE6
    AccessioniPrimary (citable) accession number: B3Q1I4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3