B3Q1I4 (B3Q1I4_RHIE6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase protein EMBL ACE93540.1

Gene names

Ordered Locus Names:

RHECIAT_PA0000196 EMBL ACE93540.1

Encoded on

Plasmid pA EMBL ACE93540.1

Organism

Rhizobium etli (strain CIAT 652) [Complete proteome] [HAMAP] EMBL ACE93540.1

Taxonomic identifier

491916 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium › Rhizobium etli

Protein attributes

Sequence length	354 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACE93540.1
Technical term	Complete proteome Plasmid EMBL ACE93540.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3Q1I4 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: 39F43B6F04C3826C	FASTA	354	39,303
	10 20 30 40 50 60 MTRPRQPSAP LLRESSSSIQ SRPVRRRDPA QPSLPFDAMP TRVEPCLALL KQTVPQGPDW 70 80 90 100 110 120 IYEVKWDGYR LAIHIEPKGI RILTRGGHDW THRFPTIAAG ASALGVSSCI LDGEAVVLDE 130 140 150 160 170 180 EGRSDFGALQ RSLGGRGGKR VSTESIFCAF DLLYLDGHDL TRTELSVRRH LLQDLIPGTD 190 200 210 220 230 240 EGAIRFSQEL DLSGEDLLEH ACHLGLEGII AKRGDRPYRS GRLGDWQKIK CVQSDSFMIV 250 260 270 280 290 300 GYEESASTRG GLGSLLLAGR KGQDWIYVGS VGTGFNREEA EYLRKTLNRL QTKKPVVPLK 310 320 330 340 350 GKRLVFSQPT LIAEIEFRGW TREGSLRHAS YKGLREIQDN AAVFDMTDGP AAIR

References

[1]

"Genome diversity and DNA divergence of Rhizobium etli." Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CIAT 652 EMBL ACE93540.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001075 Genomic DNA. Translation: ACE93540.1.
RefSeq	YP_001985803.1. NC_010998.1.
3D structure databases
ProteinModelPortal	B3Q1I4.
ModBase	Search...
Protein-protein interaction databases
STRING	491916.RHECIAT_PA0000196.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACE93540; ACE93540; RHECIAT_PA0000196.
GeneID	6404072.
KEGG	rec:RHECIAT_PA0000196.
PATRIC	23105440. VBIRhiEtl120572_5929.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	QDNAAVF.
ProtClustDB	CLSK806855.
Enzyme and pathway databases
BioCyc	RETL491916:GH4T-196-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3Q1I4_RHIE6

Accession

Primary (citable) accession number: B3Q1I4

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)