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B3Q1I4 (B3Q1I4_RHIE6) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:RHECIAT_PA0000196 EMBL ACE93540.1
Encoded onPlasmid pA Ref.1 EMBL ACE93540.1
OrganismRhizobium etli (strain CIAT 652) [Complete proteome] [HAMAP] EMBL ACE93540.1
Taxonomic identifier491916 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length354 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACE93540.1
   Technical termComplete proteome
Plasmid EMBL ACE93540.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B3Q1I4 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 39F43B6F04C3826C

FASTA35439,303
        10         20         30         40         50         60 
MTRPRQPSAP LLRESSSSIQ SRPVRRRDPA QPSLPFDAMP TRVEPCLALL KQTVPQGPDW 

        70         80         90        100        110        120 
IYEVKWDGYR LAIHIEPKGI RILTRGGHDW THRFPTIAAG ASALGVSSCI LDGEAVVLDE 

       130        140        150        160        170        180 
EGRSDFGALQ RSLGGRGGKR VSTESIFCAF DLLYLDGHDL TRTELSVRRH LLQDLIPGTD 

       190        200        210        220        230        240 
EGAIRFSQEL DLSGEDLLEH ACHLGLEGII AKRGDRPYRS GRLGDWQKIK CVQSDSFMIV 

       250        260        270        280        290        300 
GYEESASTRG GLGSLLLAGR KGQDWIYVGS VGTGFNREEA EYLRKTLNRL QTKKPVVPLK 

       310        320        330        340        350 
GKRLVFSQPT LIAEIEFRGW TREGSLRHAS YKGLREIQDN AAVFDMTDGP AAIR 

« Hide

References

[1]"Genome diversity and DNA divergence of Rhizobium etli."
Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CIAT 652 EMBL ACE93540.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001075 Genomic DNA. Translation: ACE93540.1.
RefSeqYP_001985803.1. NC_010998.1.

3D structure databases

ProteinModelPortalB3Q1I4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING491916.RHECIAT_PA0000196.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACE93540; ACE93540; RHECIAT_PA0000196.
GeneID6404072.
KEGGrec:RHECIAT_PA0000196.
PATRIC23105440. VBIRhiEtl120572_5929.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMALEHACHH.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycRETL491916:GH4T-5984-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3Q1I4_RHIE6
AccessionPrimary (citable) accession number: B3Q1I4
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)