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B3Q1I4

- B3Q1I4_RHIE6

UniProt

B3Q1I4 - B3Q1I4_RHIE6

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Protein
Submitted name: Putative ATP-dependent DNA ligase protein
Gene
RHECIAT_PA0000196
Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL491916:GH4T-5984-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase proteinImported
Gene namesi
Ordered Locus Names:RHECIAT_PA0000196Imported
Encoded oniPlasmid pAImported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817: Plasmid pA

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_PA0000196.

Structurei

3D structure databases

ProteinModelPortaliB3Q1I4.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLEHACHH.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3Q1I4-1 [UniParc]FASTAAdd to Basket

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MTRPRQPSAP LLRESSSSIQ SRPVRRRDPA QPSLPFDAMP TRVEPCLALL    50
KQTVPQGPDW IYEVKWDGYR LAIHIEPKGI RILTRGGHDW THRFPTIAAG 100
ASALGVSSCI LDGEAVVLDE EGRSDFGALQ RSLGGRGGKR VSTESIFCAF 150
DLLYLDGHDL TRTELSVRRH LLQDLIPGTD EGAIRFSQEL DLSGEDLLEH 200
ACHLGLEGII AKRGDRPYRS GRLGDWQKIK CVQSDSFMIV GYEESASTRG 250
GLGSLLLAGR KGQDWIYVGS VGTGFNREEA EYLRKTLNRL QTKKPVVPLK 300
GKRLVFSQPT LIAEIEFRGW TREGSLRHAS YKGLREIQDN AAVFDMTDGP 350
AAIR 354
Length:354
Mass (Da):39,303
Last modified:September 2, 2008 - v1
Checksum:i39F43B6F04C3826C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001075 Genomic DNA. Translation: ACE93540.1.
RefSeqiWP_012490576.1. NC_010998.1.
YP_001985803.1. NC_010998.1.

Genome annotation databases

EnsemblBacteriaiACE93540; ACE93540; RHECIAT_PA0000196.
GeneIDi6404072.
KEGGirec:RHECIAT_PA0000196.
PATRICi23105440. VBIRhiEtl120572_5929.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001075 Genomic DNA. Translation: ACE93540.1 .
RefSeqi WP_012490576.1. NC_010998.1.
YP_001985803.1. NC_010998.1.

3D structure databases

ProteinModelPortali B3Q1I4.
ModBasei Search...

Protein-protein interaction databases

STRINGi 491916.RHECIAT_PA0000196.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACE93540 ; ACE93540 ; RHECIAT_PA0000196 .
GeneIDi 6404072.
KEGGi rec:RHECIAT_PA0000196.
PATRICi 23105440. VBIRhiEtl120572_5929.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi LEHACHH.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RETL491916:GH4T-5984-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CIAT 652Imported.
    Plasmid: pA

Entry informationi

Entry nameiB3Q1I4_RHIE6
AccessioniPrimary (citable) accession number: B3Q1I4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: September 3, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported

External Data

Dasty 3

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