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B3Q1I4

- B3Q1I4_RHIE6

UniProt

B3Q1I4 - B3Q1I4_RHIE6

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Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

RHECIAT_PA0000196

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL491916:GH4T-5984-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase proteinImported
Gene namesi
Ordered Locus Names:RHECIAT_PA0000196Imported
Encoded oniPlasmid pAImported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817: Plasmid pA

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_PA0000196.

Structurei

3D structure databases

ProteinModelPortaliB3Q1I4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLEHACHH.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3Q1I4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MTRPRQPSAP LLRESSSSIQ SRPVRRRDPA QPSLPFDAMP TRVEPCLALL
60 70 80 90 100
KQTVPQGPDW IYEVKWDGYR LAIHIEPKGI RILTRGGHDW THRFPTIAAG
110 120 130 140 150
ASALGVSSCI LDGEAVVLDE EGRSDFGALQ RSLGGRGGKR VSTESIFCAF
160 170 180 190 200
DLLYLDGHDL TRTELSVRRH LLQDLIPGTD EGAIRFSQEL DLSGEDLLEH
210 220 230 240 250
ACHLGLEGII AKRGDRPYRS GRLGDWQKIK CVQSDSFMIV GYEESASTRG
260 270 280 290 300
GLGSLLLAGR KGQDWIYVGS VGTGFNREEA EYLRKTLNRL QTKKPVVPLK
310 320 330 340 350
GKRLVFSQPT LIAEIEFRGW TREGSLRHAS YKGLREIQDN AAVFDMTDGP

AAIR
Length:354
Mass (Da):39,303
Last modified:September 2, 2008 - v1
Checksum:i39F43B6F04C3826C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001075 Genomic DNA. Translation: ACE93540.1.
RefSeqiYP_001985803.1. NC_010998.1.

Genome annotation databases

EnsemblBacteriaiACE93540; ACE93540; RHECIAT_PA0000196.
GeneIDi6404072.
KEGGirec:RHECIAT_PA0000196.
PATRICi23105440. VBIRhiEtl120572_5929.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001075 Genomic DNA. Translation: ACE93540.1 .
RefSeqi YP_001985803.1. NC_010998.1.

3D structure databases

ProteinModelPortali B3Q1I4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 491916.RHECIAT_PA0000196.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACE93540 ; ACE93540 ; RHECIAT_PA0000196 .
GeneIDi 6404072.
KEGGi rec:RHECIAT_PA0000196.
PATRICi 23105440. VBIRhiEtl120572_5929.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi LEHACHH.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RETL491916:GH4T-5984-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiB3Q1I4_RHIE6
AccessioniPrimary (citable) accession number: B3Q1I4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3