B3PZZ9 (B3PZZ9_RHIE6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
1,4-alpha-glucan branching enzyme GlgB 1 HAMAP MF_00685
EC=2.4.1.18 HAMAP MF_00685

Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1 HAMAP MF_00685
Alpha-(1->4)-glucan branching enzyme 1 HAMAP MF_00685
Glycogen branching enzyme 1 HAMAP MF_00685

Gene names

Name:	glgBch EMBL ACE92799.1
Synonyms:	glgB1 HAMAP MF_00685
Ordered Locus Names:	RHECIAT_CH0003862

Organism

Rhizobium etli (strain CIAT 652) [Complete proteome] [HAMAP]

Taxonomic identifier

491916 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	735 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP MF_00685
Catalytic activity	Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP MF_00685 SAAS SAAS006407
Pathway	Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00685 SAAS SAAS006407
Subunit structure	Monomer By similarity. HAMAP MF_00685
Sequence similarities	Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. HAMAP MF_00685

Ontologies

Keywords
Biological process	Carbohydrate metabolism Glycogen biosynthesis HAMAP MF_00685 SAAS SAAS006407 Glycogen metabolism HAMAP MF_00685
Molecular function	Glycosyltransferase HAMAP MF_00685 SAAS SAAS006407 EMBL ACE92799.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	1,4-alpha-glucan branching enzyme activity Inferred from electronic annotation. Source: HAMAP cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	418	1	Nucleophile By similarity HAMAP MF_00685
	Active site	471	1	Proton donor By similarity HAMAP MF_00685

Sequences

	Sequence		Length	Mass (Da)
	B3PZZ9 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: 6FD5A5C0EAB36E4A	FASTA	735	83,401
	10 20 30 40 50 60 MKTPKTVPEV KLSWEISADE IKAILAGSHS NPFAVLGVHQ AGDTFVARCF IPGAEEVTAM 70 80 90 100 110 120 TLDGSVIGEL KQLHADGFFA GPVSLTRLQP VRYRARRGDA EWAVTDPYSF GPVLGPMDDY 130 140 150 160 170 180 FAREGSHLRL FDKMGAHLIR HDGAQGIHFA VWAPNAQRVS VVGDFNNWDG RRHVMRLRAD 190 200 210 220 230 240 SGIWEIFAPD VPIGVAYKFE IRGHDGVLLP LKADPFARRS ELRPKTASVA AAELEQVWED 250 260 270 280 290 300 EAHLKHWRET DKRRQPISIY EVHAASWQRR QDGTMLTWDE LASSLIPYCV DMGFTHIEFL 310 320 330 340 350 360 PITEHPYDPS WGYQTTGLYA PTARFGEPEG FARFVNGCHK VGIGVILDWV PAHFPTDEHG 370 380 390 400 410 420 LGWFDGTALY EHEDPRKGFH PDWNTAIYNF GRTEVVSYLV NNALYWAEKF HLDGLRVDAV 430 440 450 460 470 480 ASMLYLDYSR KHGEWIPNEY GGNENLEAVR FLQDLNTRIY GQHSNVMTIA EESTSWPKVS 490 500 510 520 530 540 QPVHEGGLGF GFKWNMGFMH DTLSYMKRDP VHRKHHHNEL TFGLLYAYSE NFVLPLSHDE 550 560 570 580 590 600 VVHGKGSLIA KMPGDDWQKF ANLRAYYAYM WGYPGKKLLF MGQEFAQWSE WSEAKSLDWN 610 620 630 640 650 660 LLQYRMHEGM RRLVRDLNFT YRSKPALHER DCEGDGFEWL VADDGENSVF AWLRKAPGQK 670 680 690 700 710 720 PVAVITNFTP VYRENYSIRL PLAGRWREIL NTDADIYGGS GKGNGGRVQA VDAGGNITCS 730 ITLPPLATIM LEPEN

References

[1]

"Genome diversity and DNA divergence of Rhizobium etli." Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001074 Genomic DNA. Translation: ACE92799.1.
RefSeq	YP_001979977.1. NC_010994.1.
3D structure databases
ProteinModelPortal	B3PZZ9.
ModBase	Search...
Protein-protein interaction databases
STRING	B3PZZ9.
Protein family/group databases
CAZy	CBM48. Carbohydrate-Binding Module Family 48. GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6401949.
GenomeReviews	Gene locus RHECIAT_CH0003862 in contig CP001074_GR.
KEGG	rec:RHECIAT_CH0003862.
PATRIC	23101166. VBIRhiEtl120572_3804.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG287139.
OMA	WEIFAPD.
ProtClustDB	PRK05402.
Family and domain databases
HAMAP	MF_00685. GlgB. [Tree]
InterPro	IPR006407. 1-4-A-glucan_branch_enz. IPR006048. A-amylase_b_C. IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KO	K00700.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF13. PTHR10357:SF13. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02806. Alpha-amylase_C. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
PIRSF	PIRSF000463. GlgB. 1 hit.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 2 hits.
TIGRFAMs	TIGR01515. Branching_enzym. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3PZZ9_RHIE6

Accession

Primary (citable) accession number: B3PZZ9

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)