Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Probable DNA ligase (ATP) protein

Gene

RHECIAT_CH0001250

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL491916:GH4T-1249-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable DNA ligase (ATP) proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RHECIAT_CH0001250Imported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0001250.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3PTH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR
60 70 80 90 100
NVKPAMLREL VLERMDEVLF RYSYDYVGDL AETISLVWDN ERDIDRSALA
110 120 130 140 150
QPRLGEVVSR MNGLGRTEVR GYVRDLLDRL DSSGRFAFIK LATGAMRIGV
160 170 180 190 200
SARLAKQALA DLGGKDVTEI ETLWHGLQPP YEALFQWLTG GGDKPALATP
210 220 230 240 250
AIFHSVMLAN AVEEGDLTGL EPGDYAAEWK WDGIRVQLSR SGDRRKIYSR
260 270 280 290 300
SGDDISGAFP DILDAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR
310 320 330 340 350
KTVTARMLDD YPAFIRAYDL LFDDEEDVRG RTYVDRRERL SEIIDRAPHD
360 370 380 390 400
RFDLSPLVPF SSWEELDALR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF
410 420 430 440 450
KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWADDED GEQLVPVGKA
460 470 480 490 500
YFGFTDAELD LLDKFVRNNT TERFGPVRAV RADRDFGFVV EVAFEGINRS
510 520 530 540
TRHKSGVAMR FPRIARLRPD KPPYEADRLR TLIAMIDAKP G
Length:541
Mass (Da):61,068
Last modified:September 2, 2008 - v1
Checksum:i5DCB1F3F2EF6F01E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001074 Genomic DNA. Translation: ACE90231.1.
RefSeqiYP_001977409.1. NC_010994.1.

Genome annotation databases

EnsemblBacteriaiACE90231; ACE90231; RHECIAT_CH0001250.
GeneIDi6399337.
KEGGirec:RHECIAT_CH0001250.
PATRICi23095922. VBIRhiEtl120572_1218.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001074 Genomic DNA. Translation: ACE90231.1.
RefSeqiYP_001977409.1. NC_010994.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0001250.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACE90231; ACE90231; RHECIAT_CH0001250.
GeneIDi6399337.
KEGGirec:RHECIAT_CH0001250.
PATRICi23095922. VBIRhiEtl120572_1218.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciRETL491916:GH4T-1249-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CIAT 652Imported.

Entry informationi

Entry nameiB3PTH1_RHIE6
AccessioniPrimary (citable) accession number: B3PTH1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: March 4, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.