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B3PTH1

- B3PTH1_RHIE6

UniProt

B3PTH1 - B3PTH1_RHIE6

Protein
Submitted name:

Probable DNA ligase (ATP) protein

Gene

RHECIAT_CH0001250

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (02 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRETL491916:GH4T-1249-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Probable DNA ligase (ATP) proteinImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:RHECIAT_CH0001250Imported
    OrganismiRhizobium etli (strain CIAT 652)Imported
    Taxonomic identifieri491916 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000008817: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi491916.RHECIAT_CH0001250.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B3PTH1-1 [UniParc]FASTAAdd to Basket

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    MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR    50
    NVKPAMLREL VLERMDEVLF RYSYDYVGDL AETISLVWDN ERDIDRSALA 100
    QPRLGEVVSR MNGLGRTEVR GYVRDLLDRL DSSGRFAFIK LATGAMRIGV 150
    SARLAKQALA DLGGKDVTEI ETLWHGLQPP YEALFQWLTG GGDKPALATP 200
    AIFHSVMLAN AVEEGDLTGL EPGDYAAEWK WDGIRVQLSR SGDRRKIYSR 250
    SGDDISGAFP DILDAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR 300
    KTVTARMLDD YPAFIRAYDL LFDDEEDVRG RTYVDRRERL SEIIDRAPHD 350
    RFDLSPLVPF SSWEELDALR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF 400
    KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWADDED GEQLVPVGKA 450
    YFGFTDAELD LLDKFVRNNT TERFGPVRAV RADRDFGFVV EVAFEGINRS 500
    TRHKSGVAMR FPRIARLRPD KPPYEADRLR TLIAMIDAKP G 541
    Length:541
    Mass (Da):61,068
    Last modified:September 2, 2008 - v1
    Checksum:i5DCB1F3F2EF6F01E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001074 Genomic DNA. Translation: ACE90231.1.
    RefSeqiYP_001977409.1. NC_010994.1.

    Genome annotation databases

    EnsemblBacteriaiACE90231; ACE90231; RHECIAT_CH0001250.
    GeneIDi6399337.
    KEGGirec:RHECIAT_CH0001250.
    PATRICi23095922. VBIRhiEtl120572_1218.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001074 Genomic DNA. Translation: ACE90231.1 .
    RefSeqi YP_001977409.1. NC_010994.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 491916.RHECIAT_CH0001250.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACE90231 ; ACE90231 ; RHECIAT_CH0001250 .
    GeneIDi 6399337.
    KEGGi rec:RHECIAT_CH0001250.
    PATRICi 23095922. VBIRhiEtl120572_1218.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci RETL491916:GH4T-1249-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome diversity and DNA divergence of Rhizobium etli."
      Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CIAT 652Imported.

    Entry informationi

    Entry nameiB3PTH1_RHIE6
    AccessioniPrimary (citable) accession number: B3PTH1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3