SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B3PTH1

- B3PTH1_RHIE6

UniProt

B3PTH1 - B3PTH1_RHIE6

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Probable DNA ligase (ATP) protein

Gene
RHECIAT_CH0001250
Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL491916:GH4T-1249-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable DNA ligase (ATP) proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RHECIAT_CH0001250Imported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0001250.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3PTH1-1 [UniParc]FASTAAdd to Basket

« Hide

MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR    50
NVKPAMLREL VLERMDEVLF RYSYDYVGDL AETISLVWDN ERDIDRSALA 100
QPRLGEVVSR MNGLGRTEVR GYVRDLLDRL DSSGRFAFIK LATGAMRIGV 150
SARLAKQALA DLGGKDVTEI ETLWHGLQPP YEALFQWLTG GGDKPALATP 200
AIFHSVMLAN AVEEGDLTGL EPGDYAAEWK WDGIRVQLSR SGDRRKIYSR 250
SGDDISGAFP DILDAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR 300
KTVTARMLDD YPAFIRAYDL LFDDEEDVRG RTYVDRRERL SEIIDRAPHD 350
RFDLSPLVPF SSWEELDALR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF 400
KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWADDED GEQLVPVGKA 450
YFGFTDAELD LLDKFVRNNT TERFGPVRAV RADRDFGFVV EVAFEGINRS 500
TRHKSGVAMR FPRIARLRPD KPPYEADRLR TLIAMIDAKP G 541
Length:541
Mass (Da):61,068
Last modified:September 2, 2008 - v1
Checksum:i5DCB1F3F2EF6F01E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001074 Genomic DNA. Translation: ACE90231.1.
RefSeqiYP_001977409.1. NC_010994.1.

Genome annotation databases

EnsemblBacteriaiACE90231; ACE90231; RHECIAT_CH0001250.
GeneIDi6399337.
KEGGirec:RHECIAT_CH0001250.
PATRICi23095922. VBIRhiEtl120572_1218.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001074 Genomic DNA. Translation: ACE90231.1 .
RefSeqi YP_001977409.1. NC_010994.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 491916.RHECIAT_CH0001250.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACE90231 ; ACE90231 ; RHECIAT_CH0001250 .
GeneIDi 6399337.
KEGGi rec:RHECIAT_CH0001250.
PATRICi 23095922. VBIRhiEtl120572_1218.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci RETL491916:GH4T-1249-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CIAT 652Imported.

Entry informationi

Entry nameiB3PTH1_RHIE6
AccessioniPrimary (citable) accession number: B3PTH1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi