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Protein
Submitted name:

Probable ATP-dependent DNA ligase protein

Gene

RHECIAT_CH0000692

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL491916:GH4T-692-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RHECIAT_CH0000692Imported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0000692.

Structurei

3D structure databases

ProteinModelPortaliB3PPH4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3PPH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALETYQAKR NFKLTPEPRG QKGRSTGNSF VIQKHDATRL HYDFRLEMDG
60 70 80 90 100
VLKSWAVTKG PSLNPEDKRL AVHVEDHPLS YGDFEGIIPK GQYGGGTVIV
110 120 130 140 150
WDRGTWTPVG DADKAYRKGH LEFELDGEKL KGRWHLVRMH GRPGEARENW
160 170 180 190 200
LLIKGDDAEA RHDGNILEER PESAKTGRQL EEVAENPDAT WKSRSGNGKA
210 220 230 240 250
VAAKTPAQKA KPSGSGERQW PKGARKGAMP DFIEPVLAKL KPKPPAGDRW
260 270 280 290 300
IHEIKFDGYR LQVRMEDGKV RMLTRSGLDW TAKFGKDVLD AFAALPVQSA
310 320 330 340 350
VIDGEIVVES DSGASDFSAL QRDLSEGRND RFVFYAFDLL HLDGHNLLDA
360 370 380 390 400
RLIDRKHLLE SLLPADNDKL RYSAHFNERG GLVLDHACRL SLEGVLSKLR
410 420 430 440 450
DSKYTSGRKG DWIKSKCSHR QEFVIGGYVP STSMKNAIGS LAMGYYRDGE
460 470 480 490 500
LKHVGRVGTG YTVATAQMLY EKLSRMTQNE NSFDDKLTAE ERRGLIYVKP
510 520 530 540 550
QLVGEVEFRA WSADGNLRHA AFRGLREDKL AKEVTRETEQ TAAPLPKAAV
560 570 580 590 600
TLTHPDRIYW PDEGVTKEGL ANYYAQVWRF MAPYVVNRPL ALLRLPDGIN
610 620 630 640 650
GRQRFFQKHA WKGMNPHIEE IIDPKDKQGE KLLRITDFDG VVALVQSAVL
660 670 680 690 700
EIHPWGTTTD NWEKPDMITM DLDPGEAVAW EDVIVAAYEL KARLEAEGLA
710 720 730 740 750
AFVKTSGGKG LHVVTPLAPK ASWVEVKAFA KGLADSMSAD DPDRYLATAT
760 770 780 790 800
KAKRKGRIFI DYLRNGRGNT AVAAYSTRAR PGAAVSMPLE WSELTADIGP
810 820 830
AYFTVDNTPT RLDALPGDPW DGFFAAAKPL EKKKG
Length:835
Mass (Da):93,103
Last modified:September 2, 2008 - v1
Checksum:i6BAA3DE80164F95A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001074 Genomic DNA. Translation: ACE89681.1.
RefSeqiWP_012482646.1. NC_010994.1.
YP_001976859.1. NC_010994.1.

Genome annotation databases

EnsemblBacteriaiACE89681; ACE89681; RHECIAT_CH0000692.
KEGGirec:RHECIAT_CH0000692.
PATRICi23094836. VBIRhiEtl120572_0680.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001074 Genomic DNA. Translation: ACE89681.1.
RefSeqiWP_012482646.1. NC_010994.1.
YP_001976859.1. NC_010994.1.

3D structure databases

ProteinModelPortaliB3PPH4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0000692.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACE89681; ACE89681; RHECIAT_CH0000692.
KEGGirec:RHECIAT_CH0000692.
PATRICi23094836. VBIRhiEtl120572_0680.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRETL491916:GH4T-692-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CIAT 652Imported.

Entry informationi

Entry nameiB3PPH4_RHIE6
AccessioniPrimary (citable) accession number: B3PPH4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 27, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.