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B3PPH4 (B3PPH4_RHIE6) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ACE89681.1
Gene names
Ordered Locus Names:RHECIAT_CH0000692 EMBL ACE89681.1
OrganismRhizobium etli (strain CIAT 652) [Complete proteome] [HAMAP] EMBL ACE89681.1
Taxonomic identifier491916 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length835 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B3PPH4 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 6BAA3DE80164F95A

FASTA83593,103
        10         20         30         40         50         60 
MALETYQAKR NFKLTPEPRG QKGRSTGNSF VIQKHDATRL HYDFRLEMDG VLKSWAVTKG 

        70         80         90        100        110        120 
PSLNPEDKRL AVHVEDHPLS YGDFEGIIPK GQYGGGTVIV WDRGTWTPVG DADKAYRKGH 

       130        140        150        160        170        180 
LEFELDGEKL KGRWHLVRMH GRPGEARENW LLIKGDDAEA RHDGNILEER PESAKTGRQL 

       190        200        210        220        230        240 
EEVAENPDAT WKSRSGNGKA VAAKTPAQKA KPSGSGERQW PKGARKGAMP DFIEPVLAKL 

       250        260        270        280        290        300 
KPKPPAGDRW IHEIKFDGYR LQVRMEDGKV RMLTRSGLDW TAKFGKDVLD AFAALPVQSA 

       310        320        330        340        350        360 
VIDGEIVVES DSGASDFSAL QRDLSEGRND RFVFYAFDLL HLDGHNLLDA RLIDRKHLLE 

       370        380        390        400        410        420 
SLLPADNDKL RYSAHFNERG GLVLDHACRL SLEGVLSKLR DSKYTSGRKG DWIKSKCSHR 

       430        440        450        460        470        480 
QEFVIGGYVP STSMKNAIGS LAMGYYRDGE LKHVGRVGTG YTVATAQMLY EKLSRMTQNE 

       490        500        510        520        530        540 
NSFDDKLTAE ERRGLIYVKP QLVGEVEFRA WSADGNLRHA AFRGLREDKL AKEVTRETEQ 

       550        560        570        580        590        600 
TAAPLPKAAV TLTHPDRIYW PDEGVTKEGL ANYYAQVWRF MAPYVVNRPL ALLRLPDGIN 

       610        620        630        640        650        660 
GRQRFFQKHA WKGMNPHIEE IIDPKDKQGE KLLRITDFDG VVALVQSAVL EIHPWGTTTD 

       670        680        690        700        710        720 
NWEKPDMITM DLDPGEAVAW EDVIVAAYEL KARLEAEGLA AFVKTSGGKG LHVVTPLAPK 

       730        740        750        760        770        780 
ASWVEVKAFA KGLADSMSAD DPDRYLATAT KAKRKGRIFI DYLRNGRGNT AVAAYSTRAR 

       790        800        810        820        830 
PGAAVSMPLE WSELTADIGP AYFTVDNTPT RLDALPGDPW DGFFAAAKPL EKKKG 

« Hide

References

[1]"Genome diversity and DNA divergence of Rhizobium etli."
Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CIAT 652 EMBL ACE89681.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001074 Genomic DNA. Translation: ACE89681.1.
RefSeqYP_001976859.1. NC_010994.1.

3D structure databases

ProteinModelPortalB3PPH4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING491916.RHECIAT_CH0000692.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACE89681; ACE89681; RHECIAT_CH0000692.
GeneID6398780.
KEGGrec:RHECIAT_CH0000692.
PATRIC23094836. VBIRhiEtl120572_0680.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASACDMAL.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycRETL491916:GH4T-692-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3PPH4_RHIE6
AccessionPrimary (citable) accession number: B3PPH4
Entry history
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)