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B3PPH4

- B3PPH4_RHIE6

UniProt

B3PPH4 - B3PPH4_RHIE6

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Protein
Submitted name: Probable ATP-dependent DNA ligase protein
Gene
RHECIAT_CH0000692
Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL491916:GH4T-692-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RHECIAT_CH0000692Imported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008817: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0000692.

Structurei

3D structure databases

ProteinModelPortaliB3PPH4.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3PPH4-1 [UniParc]FASTAAdd to Basket

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MALETYQAKR NFKLTPEPRG QKGRSTGNSF VIQKHDATRL HYDFRLEMDG    50
VLKSWAVTKG PSLNPEDKRL AVHVEDHPLS YGDFEGIIPK GQYGGGTVIV 100
WDRGTWTPVG DADKAYRKGH LEFELDGEKL KGRWHLVRMH GRPGEARENW 150
LLIKGDDAEA RHDGNILEER PESAKTGRQL EEVAENPDAT WKSRSGNGKA 200
VAAKTPAQKA KPSGSGERQW PKGARKGAMP DFIEPVLAKL KPKPPAGDRW 250
IHEIKFDGYR LQVRMEDGKV RMLTRSGLDW TAKFGKDVLD AFAALPVQSA 300
VIDGEIVVES DSGASDFSAL QRDLSEGRND RFVFYAFDLL HLDGHNLLDA 350
RLIDRKHLLE SLLPADNDKL RYSAHFNERG GLVLDHACRL SLEGVLSKLR 400
DSKYTSGRKG DWIKSKCSHR QEFVIGGYVP STSMKNAIGS LAMGYYRDGE 450
LKHVGRVGTG YTVATAQMLY EKLSRMTQNE NSFDDKLTAE ERRGLIYVKP 500
QLVGEVEFRA WSADGNLRHA AFRGLREDKL AKEVTRETEQ TAAPLPKAAV 550
TLTHPDRIYW PDEGVTKEGL ANYYAQVWRF MAPYVVNRPL ALLRLPDGIN 600
GRQRFFQKHA WKGMNPHIEE IIDPKDKQGE KLLRITDFDG VVALVQSAVL 650
EIHPWGTTTD NWEKPDMITM DLDPGEAVAW EDVIVAAYEL KARLEAEGLA 700
AFVKTSGGKG LHVVTPLAPK ASWVEVKAFA KGLADSMSAD DPDRYLATAT 750
KAKRKGRIFI DYLRNGRGNT AVAAYSTRAR PGAAVSMPLE WSELTADIGP 800
AYFTVDNTPT RLDALPGDPW DGFFAAAKPL EKKKG 835
Length:835
Mass (Da):93,103
Last modified:September 2, 2008 - v1
Checksum:i6BAA3DE80164F95A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001074 Genomic DNA. Translation: ACE89681.1.
RefSeqiYP_001976859.1. NC_010994.1.

Genome annotation databases

EnsemblBacteriaiACE89681; ACE89681; RHECIAT_CH0000692.
GeneIDi6398780.
KEGGirec:RHECIAT_CH0000692.
PATRICi23094836. VBIRhiEtl120572_0680.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001074 Genomic DNA. Translation: ACE89681.1 .
RefSeqi YP_001976859.1. NC_010994.1.

3D structure databases

ProteinModelPortali B3PPH4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 491916.RHECIAT_CH0000692.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACE89681 ; ACE89681 ; RHECIAT_CH0000692 .
GeneIDi 6398780.
KEGGi rec:RHECIAT_CH0000692.
PATRICi 23094836. VBIRhiEtl120572_0680.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RETL491916:GH4T-692-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome diversity and DNA divergence of Rhizobium etli."
    Gonzalez V., Acosta J.L., Santamaria R.I., Bustos P., Hernandez-Gonzalez I.L., Fernandez J.L., Diaz R., Flores M., Mora J., Palacios R., Davila G.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CIAT 652Imported.

Entry informationi

Entry nameiB3PPH4_RHIE6
AccessioniPrimary (citable) accession number: B3PPH4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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