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Protein
Submitted name:

Probable ATP-dependent DNA ligase protein

Gene

RHECIAT_CH0000692

Organism
Rhizobium etli (strain CIAT 652)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciRETL491916:G1GBZ-692-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
Probable ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RHECIAT_CH0000692Imported
OrganismiRhizobium etli (strain CIAT 652)Imported
Taxonomic identifieri491916 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
Proteomesi
  • UP000008817 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi491916.RHECIAT_CH0000692

Structurei

3D structure databases

ProteinModelPortaliB3PPH4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini325 – 450DNA_LIGASE_A3InterPro annotationAdd BLAST126

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000222509
KOiK01971
OMAiNWLLIKG
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

B3PPH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALETYQAKR NFKLTPEPRG QKGRSTGNSF VIQKHDATRL HYDFRLEMDG
60 70 80 90 100
VLKSWAVTKG PSLNPEDKRL AVHVEDHPLS YGDFEGIIPK GQYGGGTVIV
110 120 130 140 150
WDRGTWTPVG DADKAYRKGH LEFELDGEKL KGRWHLVRMH GRPGEARENW
160 170 180 190 200
LLIKGDDAEA RHDGNILEER PESAKTGRQL EEVAENPDAT WKSRSGNGKA
210 220 230 240 250
VAAKTPAQKA KPSGSGERQW PKGARKGAMP DFIEPVLAKL KPKPPAGDRW
260 270 280 290 300
IHEIKFDGYR LQVRMEDGKV RMLTRSGLDW TAKFGKDVLD AFAALPVQSA
310 320 330 340 350
VIDGEIVVES DSGASDFSAL QRDLSEGRND RFVFYAFDLL HLDGHNLLDA
360 370 380 390 400
RLIDRKHLLE SLLPADNDKL RYSAHFNERG GLVLDHACRL SLEGVLSKLR
410 420 430 440 450
DSKYTSGRKG DWIKSKCSHR QEFVIGGYVP STSMKNAIGS LAMGYYRDGE
460 470 480 490 500
LKHVGRVGTG YTVATAQMLY EKLSRMTQNE NSFDDKLTAE ERRGLIYVKP
510 520 530 540 550
QLVGEVEFRA WSADGNLRHA AFRGLREDKL AKEVTRETEQ TAAPLPKAAV
560 570 580 590 600
TLTHPDRIYW PDEGVTKEGL ANYYAQVWRF MAPYVVNRPL ALLRLPDGIN
610 620 630 640 650
GRQRFFQKHA WKGMNPHIEE IIDPKDKQGE KLLRITDFDG VVALVQSAVL
660 670 680 690 700
EIHPWGTTTD NWEKPDMITM DLDPGEAVAW EDVIVAAYEL KARLEAEGLA
710 720 730 740 750
AFVKTSGGKG LHVVTPLAPK ASWVEVKAFA KGLADSMSAD DPDRYLATAT
760 770 780 790 800
KAKRKGRIFI DYLRNGRGNT AVAAYSTRAR PGAAVSMPLE WSELTADIGP
810 820 830
AYFTVDNTPT RLDALPGDPW DGFFAAAKPL EKKKG
Length:835
Mass (Da):93,103
Last modified:September 2, 2008 - v1
Checksum:i6BAA3DE80164F95A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001074 Genomic DNA Translation: ACE89681.1
RefSeqiWP_012482646.1, NC_010994.1

Genome annotation databases

EnsemblBacteriaiACE89681; ACE89681; RHECIAT_CH0000692
KEGGirec:RHECIAT_CH0000692

Similar proteinsi

Entry informationi

Entry nameiB3PPH4_RHIE6
AccessioniPrimary (citable) accession number: B3PPH4
Entry historyiIntegrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: April 25, 2018
This is version 55 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health