B3PGW4 (B3PGW4_CELJU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Rhamnogalacturonan lyase, rgl11A EMBL ACE83155.1
EC=4.2.2.- EMBL ACE83155.1

Gene names

Name:	rgl11A EMBL ACE83155.1
Ordered Locus Names:	CJA_3559

Organism

Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa) [Complete proteome] [HAMAP] EMBL ACE83155.1

Taxonomic identifier

498211 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Cellvibrio

Protein attributes

Sequence length	881 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ACE83155.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW polysaccharide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3PGW4 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: CD20CF2B6E5D9A67	FASTA	881	93,368
	10 20 30 40 50 60 MKITMQGKEP SRSPLWRPQN RSLFHRLCKQ VLALGCSVLL AAPAFAARQA EYLDRGVVAL 70 80 90 100 110 120 PSGSGIYIGW RMLGDDPANI GFHVYRNGTR ITSSPITNST NYFDASGSSS AAYTVRPVVN 130 140 150 160 170 180 GVEQAANPAK ATWSNPYWLV NLNRPAGGTT PSGEAYSYSP NDLSVGDLDG DGQYDIIVKW 190 200 210 220 230 240 EPSNAKDNSQ SGYTGNVYVD AYRLNGSQLW RIDLGRNIRA GAHYTQFIVY DLDGDGKAEV 250 260 270 280 290 300 AMKTAPGTRD AAGNVLGGSN ANTDYRNASG YVLSGAEYLT IFNGQTGVAM ATTDYVPARG 310 320 330 340 350 360 TVSSWGDNYG NRVDRFLAGV AYLDGQRPSL VMARGYYTRA VVVAWDWRNG SLSRRWTFDS 370 380 390 400 410 420 NSGGNSAAAG QGAHSLTIGD VDQDGRDEIV YGAATINDNG TLLYSTGLGH GDALHLGDFN 430 440 450 460 470 480 PNRPGLEVFM VHESPSSYGQ HGIEMHDART GAIVWSVQGG GDIGRGVTMD VDPRYPGNES 490 500 510 520 530 540 WASTGGLYSA TGQQITTSKP ASINFGVWWD ADLLREQLNN TMIDKWNYSN NTSSRLLTAY 550 560 570 580 590 600 NYGAASNNGT KATPGLSADL FGDWREEVIW RHDNNSQLLI FSTTAVTTHK LRTLMHDTQY 610 620 630 640 650 660 RTAIAWQNVA YNQPPHPSFF LGDGMATPAA PDIYFVGTNP NGGSTGSSSS SSSSSVAAPQ 670 680 690 700 710 720 VNLSGVAGNG QVSLSWTVNG SINGIEIYRD TDADPAGRTR IASLSASTRS YTATGLTNGQ 730 740 750 760 770 780 PYWFWVKYTG ADGTAYNSNA FNATPVGAAT SSSSSVASSS SSSSSSSVAS SAVSSSSAAS 790 800 810 820 830 840 GGSGSCSYVI TNNWGSGFTG AIRITNRGSS AINGWNVSWT YSGNTRISNS WNATVSGSNP 850 860 870 880 YSAANLGWNA TIQPGQTVEF GFQGTYSGST ETPVISGSVC N

References

[1]

"Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus." DeBoy R.T., Mongodin E.F., Fouts D.E., Tailford L.E., Khouri H., Emerson J.B., Mohamoud Y., Watkins K., Henrissat B., Gilbert H.J., Nelson K.E. J. Bacteriol. 190:5455-5463(2008) [PubMed: 18556790] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000934 Genomic DNA. Translation: ACE83155.1.
RefSeq	YP_001984012.1. NC_010995.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B3PGW4.
Protein family/group databases
CAZy	CBM2. Carbohydrate-Binding Module Family 2. PL11. Polysaccharide Lyase Family 11.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6414532.
GenomeReviews	Gene locus CJA_3559 in contig CP000934_GR.
KEGG	cja:CJA_3559.
PATRIC	21330509. VBICelJap122165_3518.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG425203.
OMA	WRIDLGR.
ProtClustDB	CLSK761863.
Family and domain databases
InterPro	IPR008965. Carb-bd_dom. IPR012291. CBD_carb-bd_dom. IPR018366. CBM2_CS. IPR001919. Cellulose-bd_dom_fam2_bac. IPR013517. FG-GAP. IPR003961. Fibronectin_type3. IPR013783. Ig-like_fold. [Graphical view]
Gene3D	G3DSA:2.60.40.290. CBD_carb_bd. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
Pfam	PF00553. CBM_2. 1 hit. PF01839. FG-GAP. 1 hit. [Graphical view]
SMART	SM00637. CBD_II. 1 hit. SM00060. FN3. 1 hit. [Graphical view]
SUPFAM	SSF49384. Cellul_bind. 1 hit. SSF49265. FN_III-like. 1 hit.
PROSITE	PS51173. CBM2. 1 hit. PS00561. CBM2_A. 1 hit. PS50853. FN3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3PGW4_CELJU

Accession

Primary (citable) accession number: B3PGW4

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)