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Protein
Submitted name:

cDNA FLJ44500 fis, clone UTERU3000828, highly similar to 116 kDa U5 small nuclear ribonucleoprotein component

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ44500 fis, clone UTERU3000828, highly similar to 116 kDa U5 small nuclear ribonucleoprotein componentImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA142671915

    PTM / Processingi

    Proteomic databases

    PeptideAtlasiB3KX19
    PRIDEiB3KX19

    Expressioni

    Gene expression databases

    GenevisibleiB3KX19 HS

    Structurei

    3D structure databases

    ProteinModelPortaliB3KX19
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini117 – 399Tr-type GInterPro annotationAdd BLAST283

    Phylogenomic databases

    eggNOGiKOG0469 Eukaryota
    COG0480 LUCA
    HOVERGENiHBG001838

    Family and domain databases

    CDDicd04098 eEF2_C_snRNP, 1 hit
    Gene3Di3.30.230.10, 2 hits
    InterProiView protein in InterPro
    IPR035647 EFG_III/V
    IPR000640 EFG_V-like
    IPR004161 EFTu-like_2
    IPR031950 EFTUD2_N
    IPR027417 P-loop_NTPase
    IPR020568 Ribosomal_S5_D2-typ_fold
    IPR014721 Ribosomal_S5_D2-typ_fold_subgr
    IPR005225 Small_GTP-bd_dom
    IPR000795 TF_GTP-bd_dom
    IPR009000 Transl_B-barrel_sf
    IPR005517 Transl_elong_EFG/EF2_IV
    IPR035655 U5-116kDa_C
    PfamiView protein in Pfam
    PF00679 EFG_C, 1 hit
    PF03764 EFG_IV, 1 hit
    PF16004 EFTUD2, 1 hit
    PF00009 GTP_EFTU, 1 hit
    PF03144 GTP_EFTU_D2, 1 hit
    PRINTSiPR00315 ELONGATNFCT
    SMARTiView protein in SMART
    SM00838 EFG_C, 1 hit
    SM00889 EFG_IV, 1 hit
    SUPFAMiSSF50447 SSF50447, 1 hit
    SSF52540 SSF52540, 1 hit
    SSF54211 SSF54211, 1 hit
    SSF54980 SSF54980, 2 hits
    TIGRFAMsiTIGR00231 small_GTP, 1 hit
    PROSITEiView protein in PROSITE
    PS51722 G_TR_2, 1 hit

    Sequencei

    Sequence statusi: Complete.

    B3KX19-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MDTDLYDEFG NYIGPELDSD EDDDELGRET KDLDEMDDDD DDDDVGDHDD
    60 70 80 90 100
    DHPGMEVVLH EVYGPEVETI VQEEDTQPLT EPIIKPVKTK KFTLMEQTLP
    110 120 130 140 150
    VTVYEMDFLA DLMDNSELIR NVTLCGHLHH GKTCFVDCLI EQTHPEIRKR
    160 170 180 190 200
    YDQDLCYTDI LFTEQERGVG IKSTPVTVVL PDTKGKSYLF NIMDTPGHVN
    210 220 230 240 250
    FSDEVTAGLR ISDGVVLFID AAEGVMLNTE RLIKHAVQER LAVTVCINKI
    260 270 280 290 300
    DRLILELKLP PTDAYYKLRH IVDEVNGLIS MYSTDENLIL SPLLGNVCFS
    310 320 330 340 350
    SSQYSICFTL GSFAKIYADT FGDINYQEFA KRLWGDIYFN PKTRKFTKKA
    360 370 380 390 400
    PTSSSQRSFV EFILEPLYKI LAQVVGDVDT SLPRTLDELG IHLTKEELKL
    410 420 430 440 450
    NIRPLLRLVC KKFFGEFTGF VDMCVQHIPS PKVGAKPKIE HTYTGGVDSD
    460 470 480 490 500
    LGEAMSDCDP DGPLMCHTTK MYSTDDGVQF HAFGRVLSGT IHAGQPVKVL
    510 520 530 540 550
    GENYTLEDEE DSQICTVGRL WISVARYHIE VNRVPAGNWV LIEGVDQPIV
    560 570 580 590 600
    KTATITEPRG NEEAQIFRPL KFNTTSVIKI AVEPVNPSEL PKMLDGLRKV
    610 620 630 640 650
    NKSYPSLTTK VEESGEHVIL GTGELYLDCV MHDLRKMYSE IDIKVADPVV
    660 670 680 690 700
    TFCETVVETS SLKCFAETPN KKNKITMIAE PLEKGLAEDI ENEVVQITWN
    710 720 730 740 750
    RKKLGEFFQT KYDWDLLAAR SIWAFGPDAT GPNILVDDTL PSEVDKALLG
    760 770 780 790 800
    SVKDSIVQGF QWGTREGPLC DELIRNVKFK ILDAVVAQEP LHRGGGQIIP
    810 820 830 840 850
    TARRVVYSAF LMATPRLMEP YYFVEVQAPA DCVSAVYTVL ARRRGHVTQD
    860 870 880 890 900
    APIPGSPLYT IKAFIPAIDS FGFETDLRTH TQGQAFSLSV FHHWQIVPGD
    910 920 930 940 950
    PLDKSIVIRP LEPQPAPHLA REFMIKTRRR KGLSEDVSIS KFFDDPMLLE
    960
    LAKQDVVLNY PM
    Length:962
    Mass (Da):108,210
    Last modified:September 2, 2008 - v1
    Checksum:i2F20F10787BA194F
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AK126464 mRNA Translation: BAG54331.1
    RefSeqiNP_001136077.1, NM_001142605.1
    NP_004238.3, NM_004247.3
    UniGeneiHs.151787

    Genome annotation databases

    GeneIDi9343

    Similar proteinsi

    Entry informationi

    Entry nameiB3KX19_HUMAN
    AccessioniPrimary (citable) accession number: B3KX19
    Entry historyiIntegrated into UniProtKB/TrEMBL: September 2, 2008
    Last sequence update: September 2, 2008
    Last modified: May 23, 2018
    This is version 78 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

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