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Protein
Submitted name:

cDNA FLJ34086 fis, clone FCBBF3005320, highly similar to Double-stranded RNA-binding protein Staufen homolog 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ34086 fis, clone FCBBF3005320, highly similar to Double-stranded RNA-binding protein Staufen homolog 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36188.

PTM / Processingi

Proteomic databases

PRIDEiB3KRE0.

Expressioni

Gene expression databases

BgeeiB3KRE0.
GenevisibleiB3KRE0. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000360922.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000231025.
HOVERGENiHBG005013.
KOiK17597.

Family and domain databases

Gene3Di3.30.160.20. 2 hits.
InterProiIPR014720. dsRNA-bd_dom.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
[Graphical view]
SMARTiSM00358. DSRM. 1 hit.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3KRE0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNFVTKVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL PPLPAVERVK
60 70 80 90 100
PRIKKKTKPI VKPQTSPEYG QGINPISRLA QIQQAKKEKE PEYTLLTERG
110 120 130 140 150
LPRRREFVMQ VKVGNHTAEG TGTNKKVAKR NAAENMLEIL GFKVPQAQPT
160 170 180 190 200
KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE FRMPYLSHQQ
210 220 230 240 250
LPAGILPMVP EVAQAVGVSQ GHHTKDFTRA APNPAKATVT AMIARELLYG
260 270 280 290 300
GTSPTAETIL KNNISSGHVP HGPLTRPSEQ LDYLSRVQGF QVEYKDFPKN
310 320 330 340 350
NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL LSELDQQSTE
360
MPRTGNGPMS VCGRC
Length:365
Mass (Da):40,001
Last modified:September 2, 2008 - v1
Checksum:i89DC9AB32A76E31C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK091405 mRNA. Translation: BAG52352.1.
RefSeqiNP_001032405.1. NM_001037328.1.
NP_004593.2. NM_004602.2.
NP_059346.2. NM_017452.2.
NP_059347.2. NM_017453.2.
NP_059348.2. NM_017454.2.
UniGeneiHs.596704.

Genome annotation databases

GeneIDi6780.
KEGGihsa:6780.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK091405 mRNA. Translation: BAG52352.1.
RefSeqiNP_001032405.1. NM_001037328.1.
NP_004593.2. NM_004602.2.
NP_059346.2. NM_017452.2.
NP_059347.2. NM_017453.2.
NP_059348.2. NM_017454.2.
UniGeneiHs.596704.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000360922.

Proteomic databases

PRIDEiB3KRE0.

Protocols and materials databases

DNASUi6780.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi6780.
KEGGihsa:6780.

Organism-specific databases

CTDi6780.
PharmGKBiPA36188.

Phylogenomic databases

HOGENOMiHOG000231025.
HOVERGENiHBG005013.
KOiK17597.

Miscellaneous databases

GenomeRNAii6780.
NextBioi26468.

Gene expression databases

BgeeiB3KRE0.
GenevisibleiB3KRE0. HS.

Family and domain databases

Gene3Di3.30.160.20. 2 hits.
InterProiIPR014720. dsRNA-bd_dom.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
[Graphical view]
SMARTiSM00358. DSRM. 1 hit.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.

Entry informationi

Entry nameiB3KRE0_HUMAN
AccessioniPrimary (citable) accession number: B3KRE0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: June 24, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.