B3KRE0 (B3KRE0_HUMAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: cDNA FLJ34086 fis, clone FCBBF3005320, highly similar to Double-stranded RNA-binding protein Staufen homolog 1 EMBL BAG52352.1
Organism	Homo sapiens (Human) EMBL BAG52352.1
Taxonomic identifier	9606 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo

Protein attributes

Sequence length	365 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	intracellular mRNA localization Inferred from electronic annotation. Source: Compara
Cellular_component	ribonucleoprotein complex Inferred from electronic annotation. Source: Compara
Molecular_function	double-stranded RNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3KRE0 [UniParc]. Last modified September 2, 2008. Version 1. Checksum: 89DC9AB32A76E31C	FASTA	365	40,001
	10 20 30 40 50 60 MKNFVTKVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL PPLPAVERVK PRIKKKTKPI 70 80 90 100 110 120 VKPQTSPEYG QGINPISRLA QIQQAKKEKE PEYTLLTERG LPRRREFVMQ VKVGNHTAEG 130 140 150 160 170 180 TGTNKKVAKR NAAENMLEIL GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD 190 200 210 220 230 240 ENGTSNKEDE FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTKDFTRA APNPAKATVT 250 260 270 280 290 300 AMIARELLYG GTSPTAETIL KNNISSGHVP HGPLTRPSEQ LDYLSRVQGF QVEYKDFPKN 310 320 330 340 350 360 NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL LSELDQQSTE MPRTGNGPMS VCGRC

References

[1]

"Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S. Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Brain EMBL BAG52352.1.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK091405 mRNA. Translation: BAG52352.1.
IPI	IPI00218609.
RefSeq	NP_001032405.1. NM_001037328.1. NP_004593.2. NM_004602.2. NP_059346.2. NM_017452.2. NP_059347.2. NM_017453.2. NP_059348.2. NM_017454.2.
UniGene	Hs.596704.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B3KRE0.
Proteomic databases
PRIDE	B3KRE0.
Protocols and materials databases
DNASU	6780.
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6780.
KEGG	hsa:6780.
Organism-specific databases
CTD	6780.
PharmGKB	PA36188.
Phylogenomic databases
HOGENOM	HOG000231025.
HOVERGEN	HBG005013.
Gene expression databases
ArrayExpress	B3KRE0.
Bgee	B3KRE0.
Family and domain databases
Gene3D	3.30.160.20. 2 hits.
InterPro	IPR001159. Ds-RNA-bd. IPR014720. dsRNA-bd-like_dom. [Graphical view]
Pfam	PF00035. dsrm. 2 hits. [Graphical view]
SMART	SM00358. DSRM. 1 hit. [Graphical view]
PROSITE	PS50137. DS_RBD. 2 hits. [Graphical view]
ProtoNet	Search...
Other
GenomeRNAi	6780.
NextBio	26468.

Entry information

Entry name

B3KRE0_HUMAN

Accession

Primary (citable) accession number: B3KRE0

Entry history

Integrated into UniProtKB/TrEMBL:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	March 6, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.