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B3H5S2

- B3H5S2_ARATH

UniProt

B3H5S2 - B3H5S2_ARATH

Protein

Ribulose bisphosphate carboxylase small chain

Gene

At5g38410

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 5 out of 5- Protein inferred from homologyi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (22 Jul 2008)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.UniRule annotationSAAS annotation

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotation
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. lyase activity Source: UniProtKB-KW
    2. monooxygenase activity Source: UniProtKB-KW

    GO - Biological processi

    1. carbon fixation Source: UniProtKB-KW
    2. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: TAIR
    3. photorespiration Source: UniProtKB-KW
    4. photosynthesis Source: TAIR
    5. response to blue light Source: TAIR
    6. response to far red light Source: TAIR
    7. response to red light Source: TAIR

    Keywords - Molecular functioni

    LyaseUniRule annotationSAAS annotation, MonooxygenaseUniRule annotationSAAS annotation, Oxidoreductase

    Keywords - Biological processi

    Carbon dioxide fixationUniRule annotationSAAS annotation, PhotorespirationUniRule annotationSAAS annotation, PhotosynthesisUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
    Gene namesi
    Ordered Locus Names:At5g38410Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G38410.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: TAIR
    2. cell wall Source: TAIR
    3. chloroplast Source: TAIR
    4. chloroplast envelope Source: TAIR
    5. chloroplast stroma Source: TAIR
    6. cytosolic ribosome Source: TAIR
    7. membrane Source: TAIR
    8. thylakoid Source: TAIR

    Keywords - Cellular componenti

    ChloroplastSAAS annotation, Plastid

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.UniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliB3H5S2.
    SMRiB3H5S2. Positions 56-183.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG4451.
    HOGENOMiHOG000141332.
    KOiK01602.
    OMAiVKEVEEC.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view]
    PfamiPF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    PRINTSiPR00152. RUBISCOSMALL.
    SMARTiSM00961. RuBisCO_small. 1 hit.
    [Graphical view]
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B3H5S2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG    50
    GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE 100
    LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC 150
    KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA 186
    Length:186
    Mass (Da):20,840
    Last modified:July 22, 2008 - v1
    Checksum:iA03CB892CBE1299F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002688 Genomic DNA. Translation: AED94313.1.
    RefSeqiNP_001119331.1. NM_001125859.1.
    UniGeneiAt.20381.
    At.24772.
    At.46639.
    At.49098.
    At.49366.
    At.70032.
    At.70053.
    At.71313.
    At.74604.
    At.75410.
    At.75674.

    Genome annotation databases

    EnsemblPlantsiAT5G38410.3; AT5G38410.3; AT5G38410.
    GeneIDi833828.
    KEGGiath:AT5G38410.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002688 Genomic DNA. Translation: AED94313.1 .
    RefSeqi NP_001119331.1. NM_001125859.1.
    UniGenei At.20381.
    At.24772.
    At.46639.
    At.49098.
    At.49366.
    At.70032.
    At.70053.
    At.71313.
    At.74604.
    At.75410.
    At.75674.

    3D structure databases

    ProteinModelPortali B3H5S2.
    SMRi B3H5S2. Positions 56-183.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G38410.3 ; AT5G38410.3 ; AT5G38410 .
    GeneIDi 833828.
    KEGGi ath:AT5G38410.

    Organism-specific databases

    TAIRi AT5G38410.

    Phylogenomic databases

    eggNOGi COG4451.
    HOGENOMi HOG000141332.
    KOi K01602.
    OMAi VKEVEEC.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view ]
    Pfami PF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    PRINTSi PR00152. RUBISCOSMALL.
    SMARTi SM00961. RuBisCO_small. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
      Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
      Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
      , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
      Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiB3H5S2_ARATH
    AccessioniPrimary (citable) accession number: B3H5S2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 22, 2008
    Last sequence update: July 22, 2008
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3