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Protein
Submitted name:

ATF (cAMP-dependent transcription factor) family

Gene

atf-7

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding transcription factor activity Source: WormBase
  • mitogen-activated protein kinase binding Source: WormBase

GO - Biological processi

  • defense response to Gram-negative bacterium Source: WormBase
  • negative regulation of innate immune response Source: WormBase
  • negative regulation of transcription by RNA polymerase II Source: WormBase
  • positive regulation of innate immune response Source: WormBase
  • positive regulation of transcription by RNA polymerase II Source: WormBase

Names & Taxonomyi

Protein namesi
Submitted name:
ATF (cAMP-dependent transcription factor) familyImported
Gene namesi
Name:atf-7Imported
ORF Names:C07G2.2Imported, CELE_C07G2.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC07G2.2d ; CE42659 ; WBGene00000223 ; atf-7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PeptideAtlasiB3GWA6

Expressioni

Gene expression databases

BgeeiWBGene00000223
ExpressionAtlasiB3GWA6 baseline and differential

Interactioni

GO - Molecular functioni

  • mitogen-activated protein kinase binding Source: WormBase

Structurei

3D structure databases

ProteinModelPortaliB3GWA6
SMRiB3GWA6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini323 – 373BZIPInterPro annotationAdd BLAST51

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili341 – 361Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1414 Eukaryota
ENOG4111CH5 LUCA
HOGENOMiHOG000021372

Family and domain databases

InterProiView protein in InterPro
IPR004827 bZIP
PfamiView protein in Pfam
PF07716 bZIP_2, 1 hit
SMARTiView protein in SMART
SM00338 BRLZ, 1 hit
PROSITEiView protein in PROSITE
PS50217 BZIP, 1 hit

Sequencei

Sequence statusi: Complete.

B3GWA6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGDTTSPFSL DTPNPKLMFT PLDLPTTAEL MQRCLAVNPF EAKFREANQK
60 70 80 90 100
ISSGSMQPNT SGANQSLEAL EANGGSQFSG SNAGTMSDLL LKIPQASLQH
110 120 130 140 150
SPGIFSNMLL NAGDSEGTTR ENLKTADISK LLSVAGDFSA QAPRTADVLN
160 170 180 190 200
AVLDMHSDRL HTINYLNNKP DFSALLRSPS SSAPNSASVL TNAMAIPSTS
210 220 230 240 250
GAPFPGTTLL VPPKTVSSYH SPLGASSQPP STQKSPADGS WDHINGEKQI
260 270 280 290 300
KKEIPYFNDD AMMLMERSNM SSSGSDQDQS ADMSNAGSTA STSTGNPVGR
310 320 330 340 350
PQNGTPGRGR GRGRSTTADM QPDERRNTIL ERNKAAAVRY RKRKKEEHDD
360 370
MMGRVQAMEA EKNQLLVRNE ILY
Length:373
Mass (Da):40,023
Last modified:July 22, 2008 - v1
Checksum:i249D017117FD09D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA Translation: CAQ58094.1
RefSeqiNP_001129834.1, NM_001136362.2
UniGeneiCel.17887

Genome annotation databases

EnsemblMetazoaiC07G2.2d; C07G2.2d; WBGene00000223
GeneIDi175587

Entry informationi

Entry nameiB3GWA6_CAEEL
AccessioniPrimary (citable) accession number: B3GWA6
Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: April 25, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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