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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Cphamn1_2394

Organism
Chlorobium phaeobacteroides (strain BS1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei221 – 2211NucleophileUniRule annotation
Active sitei251 – 2511Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciCPHA331678:GHME-2447-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Cphamn1_2394Imported
OrganismiChlorobium phaeobacteroides (strain BS1)Imported
Taxonomic identifieri331678 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupChlorobium
ProteomesiUP000001228 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi331678.Cphamn1_2394.

Structurei

3D structure databases

ProteinModelPortaliB3EPQ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B3EPQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQSFHWYSPN DGKFWTEWTE RVPEVSKNGF TALWLPPAYK GMAGTWDVGY
60 70 80 90 100
GVYDLFDCGE FDQKETTRTK YGTKEEYRKC IDAAHDAGVQ IYADVVLNHK
110 120 130 140 150
MGADDRQRVD KVVVVDPHNR NKTIGDCHDR GLWTYFSFPG RGDTYSSMKW
160 170 180 190 200
EWWHFDATKE YGNIYKLKDK QFETHVDSEN VNYDFLMGCD LDFDHEQVRG
210 220 230 240 250
EVHYWGKWYL DSFGMDGFRI DAVKHIRSFF FKHWLDDMRH HAQKELFAVG
260 270 280 290 300
EYWSSDLGRL LRYIKETEGR MHLFDVPLHQ NFHHASKAGA GYDMGSILNN
310 320 330 340 350
SLLKEKPSLA VTIVENHDTQ PLQSLESPVE SWFKPLAYAI ILLRDEGYPC
360 370 380 390 400
VFSADYFGAE YEDKGHKILM DSHRWMIDLF LNARSKCTFG HRRDYFDHRH
410 420 430 440 450
TIGWTFQGDA KHKSMAILMT NGADDTKWME TGRPHRTYRD LTRHIDETVE
460 470
TNEWGWAPFR TRGGKVSVWM EE
Length:472
Mass (Da):55,518
Last modified:July 22, 2008 - v1
Checksum:i27770866CC214919
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001101 Genomic DNA. Translation: ACE05292.1.
RefSeqiWP_012475754.1. NC_010831.1.
YP_001960773.1. NC_010831.1.

Genome annotation databases

EnsemblBacteriaiACE05292; ACE05292; Cphamn1_2394.
KEGGicpb:Cphamn1_2394.
PATRICi21387243. VBIChlPha121022_2602.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001101 Genomic DNA. Translation: ACE05292.1.
RefSeqiWP_012475754.1. NC_010831.1.
YP_001960773.1. NC_010831.1.

3D structure databases

ProteinModelPortaliB3EPQ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi331678.Cphamn1_2394.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACE05292; ACE05292; Cphamn1_2394.
KEGGicpb:Cphamn1_2394.
PATRICi21387243. VBIChlPha121022_2602.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciCPHA331678:GHME-2447-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BS1Imported.

Entry informationi

Entry nameiB3EPQ2_CHLPB
AccessioniPrimary (citable) accession number: B3EPQ2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: April 29, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.