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Protein

Exodeoxyribonuclease 7 small subunit

Gene

xseB

Organism
Chlorobium phaeobacteroides (strain BS1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.UniRule annotationSAAS annotation

Catalytic activityi

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. exodeoxyribonuclease VII activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciCPHA331678:GHME-2364-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Exodeoxyribonuclease 7 small subunitUniRule annotationSAAS annotation (EC:3.1.11.6UniRule annotationSAAS annotation)
Alternative name(s):
Exodeoxyribonuclease VII small subunitUniRule annotation
Gene namesi
Name:xseBUniRule annotation
Ordered Locus Names:Cphamn1_2311Imported
OrganismiChlorobium phaeobacteroides (strain BS1)Imported
Taxonomic identifieri331678 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupChlorobium
ProteomesiUP000001228: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. exodeoxyribonuclease VII complex Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Heterooligomer composed of large and small subunits.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi331678.Cphamn1_2311.

Family & Domainsi

Sequence similaritiesi

Belongs to the XseB family.UniRule annotation

Phylogenomic databases

eggNOGiNOG280514.
HOGENOMiHOG000228798.
KOiK03602.
OMAiNIENPET.
OrthoDBiEOG69KV31.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S.
InterProiIPR003761. Exonuc_VII_S.
[Graphical view]
PfamiPF02609. Exonuc_VII_S. 1 hit.
[Graphical view]
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiPD028235. Exonuc_VII_S. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

B3EP76-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQKKATIEE LIARLEEITG EMEHPDTGID TSIKLYEEGL KIAAICRKRL
60 70 80
QDARQKIEII NPETSSGQEP EKKEDYGLFN AP
Length:82
Mass (Da):9,289
Last modified:July 22, 2008 - v1
Checksum:i03FFC45B59E905E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001101 Genomic DNA. Translation: ACE05215.1.
RefSeqiWP_012475677.1. NC_010831.1.
YP_001960696.1. NC_010831.1.

Genome annotation databases

EnsemblBacteriaiACE05215; ACE05215; Cphamn1_2311.
GeneIDi6376006.
KEGGicpb:Cphamn1_2311.
PATRICi21387067. VBIChlPha121022_2514.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001101 Genomic DNA. Translation: ACE05215.1.
RefSeqiWP_012475677.1. NC_010831.1.
YP_001960696.1. NC_010831.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi331678.Cphamn1_2311.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACE05215; ACE05215; Cphamn1_2311.
GeneIDi6376006.
KEGGicpb:Cphamn1_2311.
PATRICi21387067. VBIChlPha121022_2514.

Phylogenomic databases

eggNOGiNOG280514.
HOGENOMiHOG000228798.
KOiK03602.
OMAiNIENPET.
OrthoDBiEOG69KV31.

Enzyme and pathway databases

BioCyciCPHA331678:GHME-2364-MONOMER.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S.
InterProiIPR003761. Exonuc_VII_S.
[Graphical view]
PfamiPF02609. Exonuc_VII_S. 1 hit.
[Graphical view]
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiPD028235. Exonuc_VII_S. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BS1Imported.

Entry informationi

Entry nameiB3EP76_CHLPB
AccessioniPrimary (citable) accession number: B3EP76
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: March 4, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.