B3EL58 (B3EL58_CHLPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L1 HAMAP MF_01318

Gene names

Name:	rplA HAMAP MF_01318
Ordered Locus Names:	Cphamn1_0316

Organism

Chlorobium phaeobacteroides (strain BS1) [Complete proteome] [HAMAP]

Taxonomic identifier

331678 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Chlorobium

Protein attributes

Sequence length	229 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP MF_01318 Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP MF_01318
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP MF_01318
Sequence similarities	Belongs to the ribosomal protein L1P family. HAMAP MF_01318

Ontologies

Keywords
Biological process	Translation regulation HAMAP MF_01318
Ligand	RNA-binding rRNA-binding HAMAP MF_01318 tRNA-binding HAMAP MF_01318
Molecular function	Repressor HAMAP MF_01318 Ribonucleoprotein Ribosomal protein HAMAP MF_01318 EMBL ACE03285.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of translation Inferred from electronic annotation. Source: UniProtKB-KW translation Inferred from electronic annotation. Source: HAMAP
Cellular component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3EL58 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 927AE6B8A5EA92C9	FASTA	229	24,701
	10 20 30 40 50 60 MAGKKYRNAL GKASAQDEYD LQQAMELVRE INDTKFDASV DLAVRLGVDP RHADQVVRGT 70 80 90 100 110 120 VMLPHGTGKT VSVLVICSEA KASEAQEAGA DFVGFEDYIE KIQNGWTDVD VIIATPDVMG 130 140 150 160 170 180 KLGKVGKILG PRGLMPNPKS GTVTMDVAKA VKEVKAGKIE FRVDKAGNVH APVGKVSFSS 190 200 210 220 EQLFENATSF LKEIVRLKPA AAKGHYIRNI SVSSTMSPGL RVKKEKYVA

References

[1]

"Complete sequence of Chlorobium phaeobacteroides BS1." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Li T., Liu Z., Zhao F. , Overmann J., Bryant D.A., Richardson P. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BS1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001101 Genomic DNA. Translation: ACE03285.1.
RefSeq	YP_001958766.1. NC_010831.1.
3D structure databases
ProteinModelPortal	B3EL58.
ModBase	Search...
Protein-protein interaction databases
STRING	B3EL58.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6373976.
GenomeReviews	Gene locus Cphamn1_0316 in contig CP001101_GR.
KEGG	cpb:Cphamn1_0316.
PATRIC	21382643. VBIChlPha121022_0336.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG297400.
OMA	FEDYIEK.
ProtClustDB	PRK05424.
Family and domain databases
HAMAP	MF_01318_B. Ribosomal_L1_B. [Tree]
InterPro	IPR005878. Ribosom_L1_bac-type. IPR002143. Ribosomal_L1. IPR016094. Ribosomal_L1_2-a/b-sand. IPR016095. Ribosomal_L1_3-a/b-sand. IPR023673. Ribosomal_L1_CS. IPR023674. Ribosomal_L1_SF. [Graphical view]
Gene3D	G3DSA:3.30.190.20. Ribosomal_L1_2-a/b-sand. 2 hits. G3DSA:3.40.50.790. Ribosomal_L1_3-a/b-sand. 1 hit.
KO	K02863.
Pfam	PF00687. Ribosomal_L1. 1 hit. [Graphical view]
PIRSF	PIRSF002155. Ribosomal_L1. 1 hit.
SUPFAM	SSF56808. Ribosomal_L1. 1 hit.
TIGRFAMs	TIGR01169. RplA_bact. 1 hit.
PROSITE	PS01199. RIBOSOMAL_L1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3EL58_CHLPB

Accession

Primary (citable) accession number: B3EL58

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)