B3EL56 (B3EL56_CHLPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Transcription antitermination protein nusG RuleBase RU000538

Gene names

Ordered Locus Names:

Cphamn1_0314

Organism

Chlorobium phaeobacteroides (strain BS1) [Complete proteome] [HAMAP]

Taxonomic identifier

331678 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Chlorobium

Protein attributes

Sequence length	193 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Influences transcription termination and antitermination. Acts as a component of the transcription complex, and interacts with the termination factor rho and RNA polymerase By similarity. SAAS SAAS006645 RuleBase RU000538
Sequence similarities	Belongs to the nusG family. RuleBase RU003559

Ontologies

Keywords
Biological process	Transcription Transcription antitermination SAAS SAAS006645 RuleBase RU000538 Transcription regulation Transcription termination SAAS SAAS006645 RuleBase RU000538
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	positive regulation of transcription elongation from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro transcription antitermination Inferred from electronic annotation. Source: UniProtKB-KW transcription termination, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3EL56 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 7C222FDB0C0E56DC	FASTA	193	21,902
	10 20 30 40 50 60 MSESETNIEQ DAQGLSRPRW YALRIYSGHE RKVKEGIELE VERQALEDKI LQVYVPYEKF 70 80 90 100 110 120 VEVRNGKKRS LTKNAFPGYV LIEAILDKQT KNLIMDIPSV MGFLGVNDIP TPLRPDEVEK 130 140 150 160 170 180 ILEPESTVEQ RSVVEAPFRV GDTVKVIDGP FSSLTGVVHD VCVERMKVKV MISFFGRSTP 190 TELDFSQVKS ISQ

References

[1]

"Complete sequence of Chlorobium phaeobacteroides BS1." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Li T., Liu Z., Zhao F. , Overmann J., Bryant D.A., Richardson P. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BS1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001101 Genomic DNA. Translation: ACE03283.1.
RefSeq	YP_001958764.1. NC_010831.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B3EL56.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6373974.
GenomeReviews	Gene locus Cphamn1_0314 in contig CP001101_GR.
KEGG	cpb:Cphamn1_0314.
PATRIC	21382639. VBIChlPha121022_0334.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG751162.
OMA	VASGCEK.
ProtClustDB	CLSK637191.
Family and domain databases
InterPro	IPR005824. KOW. IPR001062. Transcrpt_antiterm_NusG. IPR006645. Transcrpt_antiterm_NusG_N. IPR014722. Transl_SH3-like_sub. IPR008991. Translation_prot_SH3-like. [Graphical view]
Gene3D	G3DSA:2.30.30.30. Ribosomal_L2. 1 hit. G3DSA:3.30.70.940. Transcrpt_antiterm_NusG_N. 1 hit.
KO	K02601.
Pfam	PF02357. NusG. 1 hit. [Graphical view]
PRINTS	PR00338. NUSGTNSCPFCT.
SMART	SM00739. KOW. 1 hit. SM00738. NGN. 1 hit. [Graphical view]
SUPFAM	SSF82679. Transcrpt_antiterm_NusG_N. 1 hit. SSF50104. Transl_SH3_like. 1 hit.
TIGRFAMs	TIGR00922. NusG. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3EL56_CHLPB

Accession

Primary (citable) accession number: B3EL56

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)