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B3EH06

- PNP_CHLL2

UniProt

B3EH06 - PNP_CHLL2

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Protein
Polyribonucleotide nucleotidyltransferase
Gene
pnp, Clim_0599
Organism
Chlorobium limicola (strain DSM 245 / NBRC 103803)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction By similarity.UniRule annotation

Catalytic activityi

RNA(n+1) + phosphate = RNA(n) + a nucleoside diphosphate.UniRule annotation

Cofactori

Magnesium By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi506 – 5061Magnesium By similarity
Metal bindingi512 – 5121Magnesium By similarity

GO - Molecular functioni

  1. 3'-5'-exoribonuclease activity Source: InterPro
  2. RNA binding Source: UniProtKB-HAMAP
  3. magnesium ion binding Source: UniProtKB-HAMAP
  4. polyribonucleotide nucleotidyltransferase activity Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. RNA processing Source: InterPro
  2. mRNA catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Ligandi

Magnesium, Metal-binding, RNA-binding

Enzyme and pathway databases

BioCyciCLIM290315:GHUH-627-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Alternative name(s):
Polynucleotide phosphorylase
Short name:
PNPase
Gene namesi
Name:pnp
Ordered Locus Names:Clim_0599
OrganismiChlorobium limicola (strain DSM 245 / NBRC 103803)
Taxonomic identifieri290315 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupChlorobium
ProteomesiUP000008841: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 736736Polyribonucleotide nucleotidyltransferaseUniRule annotation
PRO_0000381873Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi290315.Clim_0599.

Structurei

3D structure databases

ProteinModelPortaliB3EH06.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini573 – 63260KH
Add
BLAST
Domaini642 – 71776S1 motif
Add
BLAST

Sequence similaritiesi

Contains 1 KH domain.
Contains 1 S1 motif domain.

Phylogenomic databases

eggNOGiCOG1185.
HOGENOMiHOG000218326.
KOiK00962.
OMAiQAKEGRQ.
OrthoDBiEOG6WT8CC.

Family and domain databases

Gene3Di1.10.10.400. 1 hit.
2.40.50.140. 1 hit.
3.30.1370.10. 1 hit.
3.30.230.70. 2 hits.
HAMAPiMF_01595. PNPase.
InterProiIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR012340. NA-bd_OB-fold.
IPR012162. PNPase.
IPR027408. PNPase/RNase_PH_dom.
IPR015848. PNPase_PH_RNA-bd_bac/org-type.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PANTHERiPTHR11252. PTHR11252. 1 hit.
PfamiPF00013. KH_1. 1 hit.
PF03726. PNPase. 1 hit.
PF01138. RNase_PH. 2 hits.
PF03725. RNase_PH_C. 2 hits.
PF00575. S1. 1 hit.
[Graphical view]
PIRSFiPIRSF005499. PNPase. 1 hit.
SMARTiSM00322. KH. 1 hit.
SM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF54211. SSF54211. 2 hits.
SSF54791. SSF54791. 1 hit.
SSF55666. SSF55666. 2 hits.
TIGRFAMsiTIGR03591. polynuc_phos. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
PS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3EH06-1 [UniParc]FASTAAdd to Basket

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MISMIINKAI DLGQGKIISI ETGKMAKQAD GSVVVRLGDT MVLATVVSSK    50
KTPPPNQDYF PLQVEYREKY SAAGKFPGGF FKRESRPSEK EILSARLIDR 100
ALRPLFPDGY LFETQIIVTV ISSDQINDAD VLGGLAASAA IMVSDIPFHN 150
AMSEVRVGRI NGKFIINPDV NELVNSDLDI CIGGTTDTIC MLEGEMKEIS 200
EAEMLDAIKF GHDAIRRLCA LQNEIAAEVA KPARPFAPAV IPSELTDLVR 250
GLCETRLREL AYTPLRKEDR AEQTAAIYRE IIQSTVEHFK AAISPEEIQA 300
DPSKALCLNE HIIDEQIHAV EKKVMRHMIL DDAKRLDGRT LEEVRPISIE 350
LGIIPRAHGS ALFTRGETQA LVTITLGTKK DAQSVDNLTN NADKKFMLHY 400
NFPPFSVGET GRIGSTGRRE IGHGNLAERA IKMVAPPEQE FPYTVRIVSD 450
ILESNGSSSM ASVCGGTLAL MDGGVPIRKP VSGIAMGLIK EGSNYAVLSD 500
ILGNEDHLGD MDFKVSGTRD GITACQMDIK IDGLDYHILE SALEQARRGR 550
LHILDKMEEA IPSARVELAQ FAPRLTTIQV PVDAIGLIIG KGGETIRSIT 600
EETGAEINIE DDGTVTIACS SVEGTHAALA TIKTLLAKPE VGTIYLGKVR 650
DVRDELGAFV EFLPKTDGLV HISEISATER VAKVSDHLKI GDRIKVKLVD 700
VRKDPRTGKT RFALSMRAVE TDAANGAPQE NNQENQ 736
Length:736
Mass (Da):80,188
Last modified:July 22, 2008 - v1
Checksum:iA7748BE947B94D2E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001097 Genomic DNA. Translation: ACD89686.1.
RefSeqiWP_012465567.1. NC_010803.1.
YP_001942665.1. NC_010803.1.

Genome annotation databases

EnsemblBacteriaiACD89686; ACD89686; Clim_0599.
GeneIDi6354047.
KEGGicli:Clim_0599.
PATRICi21373193. VBIChlLim118737_0639.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001097 Genomic DNA. Translation: ACD89686.1 .
RefSeqi WP_012465567.1. NC_010803.1.
YP_001942665.1. NC_010803.1.

3D structure databases

ProteinModelPortali B3EH06.
ModBasei Search...

Protein-protein interaction databases

STRINGi 290315.Clim_0599.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD89686 ; ACD89686 ; Clim_0599 .
GeneIDi 6354047.
KEGGi cli:Clim_0599.
PATRICi 21373193. VBIChlLim118737_0639.

Phylogenomic databases

eggNOGi COG1185.
HOGENOMi HOG000218326.
KOi K00962.
OMAi QAKEGRQ.
OrthoDBi EOG6WT8CC.

Enzyme and pathway databases

BioCyci CLIM290315:GHUH-627-MONOMER.

Family and domain databases

Gene3Di 1.10.10.400. 1 hit.
2.40.50.140. 1 hit.
3.30.1370.10. 1 hit.
3.30.230.70. 2 hits.
HAMAPi MF_01595. PNPase.
InterProi IPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR012340. NA-bd_OB-fold.
IPR012162. PNPase.
IPR027408. PNPase/RNase_PH_dom.
IPR015848. PNPase_PH_RNA-bd_bac/org-type.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR022967. RNA-binding_domain_S1.
[Graphical view ]
PANTHERi PTHR11252. PTHR11252. 1 hit.
Pfami PF00013. KH_1. 1 hit.
PF03726. PNPase. 1 hit.
PF01138. RNase_PH. 2 hits.
PF03725. RNase_PH_C. 2 hits.
PF00575. S1. 1 hit.
[Graphical view ]
PIRSFi PIRSF005499. PNPase. 1 hit.
SMARTi SM00322. KH. 1 hit.
SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
SSF54211. SSF54211. 2 hits.
SSF54791. SSF54791. 1 hit.
SSF55666. SSF55666. 2 hits.
TIGRFAMsi TIGR03591. polynuc_phos. 1 hit.
PROSITEi PS50084. KH_TYPE_1. 1 hit.
PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 245 / NBRC 103803.

Entry informationi

Entry nameiPNP_CHLL2
AccessioniPrimary (citable) accession number: B3EH06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 1, 2009
Last sequence update: July 22, 2008
Last modified: September 3, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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