B3EFX7 (GCST_CHLL2) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Aminomethyltransferase
EC=2.1.2.10

Alternative name(s):
Glycine cleavage system T protein

Gene names

Name:	gcvT
Ordered Locus Names:	Clim_0417

Organism

Chlorobium limicola (strain DSM 245 / NBRC 103803) [Complete proteome] [HAMAP]

Taxonomic identifier

290315 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Chlorobium

Protein attributes

Sequence length	362 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The glycine cleavage system catalyzes the degradation of glycine By similarity. HAMAP MF_00259
Catalytic activity	[Protein]-S(8)-aminomethyldihydrolipoyllysine + tetrahydrofolate = [protein]-dihydrolipoyllysine + 5,10-methylenetetrahydrofolate + NH3. HAMAP MF_00259
Subunit structure	The glycine cleavage system is composed of four proteins: P, T, L and H By similarity.
Sequence similarities	Belongs to the GcvT family.

Ontologies

Keywords
Molecular function	Aminotransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	aminomethyltransferase activity Inferred from electronic annotation. Source: EC transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 362	362	Aminomethyltransferase HAMAP MF_00259		PRO_1000114086

Sequences

	Sequence		Length	Mass (Da)
	B3EFX7 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: C1FD6ECB7D085E5A	FASTA	362	40,473
	10 20 30 40 50 60 MKKTALYSWH EQAGAKIIDF GGYLMPVQYS GIIAEHKAVR EAAGLFDVSH MGNFYVRGVR 70 80 90 100 110 120 AGEFLQYLTT NDLSKVSDGE AQYNLMLYTD GGVVDDLIIY RIDAETYFLI VNASNAQKDY 130 140 150 160 170 180 AWIQKHIGAF EGVSLEDRTD ELSLVALQGP MSGAILRKVF PDEDCNTLAS FRFRKVYYNG 190 200 210 220 230 240 TELLIARTGY TGEQGVEICL PNEAALELWS VLMKAGEEYG IQPIGLGARD TLRLEMGYSL 250 260 270 280 290 300 YGHEIDSTVN PLEARLKWVV KMEKGPFIGK EACRQVELNP RYAVAGFSLD GRALPRQHFR 310 320 330 340 350 360 LYNSDRQEIG TVCSGTLSPT LQEPIGTCSI LREYSRPGTH VMVEIRGTMH QGVIRALPFV QR

References

[1]

"Complete sequence of Chlorobium limicola DSM 245." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Zhao F., Li T., Liu Z. , Overmann J., Bryant D.A., Richardson P. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 245 / NBRC 103803.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001097 Genomic DNA. Translation: ACD89510.1.
RefSeq	YP_001942489.1. NC_010803.1.
3D structure databases
ProteinModelPortal	B3EFX7.
ModBase	Search...
Protein-protein interaction databases
STRING	B3EFX7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6354412.
GenomeReviews	Gene locus Clim_0417 in contig CP001097_GR.
KEGG	cli:Clim_0417.
PATRIC	21372797. VBIChlLim118737_0447.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG299834.
OMA	KALYGGM.
ProtClustDB	PRK00389.
Family and domain databases
HAMAP	MF_00259. GcvT. [Tree]
InterPro	IPR013977. GCV_T_C. IPR006222. GCV_T_N. IPR006223. GcvT. IPR022903. NH2_Me_Trfase. [Graphical view]
KO	K00605.
PANTHER	PTHR13847:SF5. PTHR13847:SF5. 1 hit.
Pfam	PF01571. GCV_T. 1 hit. PF08669. GCV_T_C. 1 hit. [Graphical view]
PIRSF	PIRSF006487. GcvT. 1 hit.
TIGRFAMs	TIGR00528. GcvT. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GCST_CHLL2

Accession

Primary (citable) accession number: B3EFX7

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 24, 2009
Last sequence update:	July 22, 2008
Last modified:	January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program