Reviewed, UniProtKB/Swiss-Prot B3ED46 (AMPA_CHLL2)

Names and origin

Protein names

Recommended name:
    Probable cytosol aminopeptidase
    EC=3.4.11.1
Alternative name(s):
    Leucine aminopeptidase
      Short name=LAP
    Leucyl aminopeptidase

Gene names

Name:	pepA
Ordered Locus Names:	Clim_1411

Organism

Chlorobium limicola (strain DSM 245 / NBRC 103803) [Complete proteome] [HAMAP]

Taxonomic identifier

290315 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Chlorobium

Protein attributes

Sequence length	503 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides By similarity.
Catalytic activity	Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low. HAMAP MF_00181
Cofactor	Binds 2 manganese ions per subunit By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the peptidase M17 family.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	Manganese Metal-binding
Molecular function	Aminopeptidase Hydrolase Protease
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	aminopeptidase activity Inferred from electronic annotation. Source: HAMAP manganese ion binding Inferred from electronic annotation. Source: HAMAP metalloexopeptidase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 503	503	Probable cytosol aminopeptidase HAMAP MF_00181		PRO_1000098313
Sites
	Active site	284	1	Potential
	Active site	358	1	Potential
	Metal binding	272	1	Manganese 2 By similarity
	Metal binding	277	1	Manganese 1 By similarity
	Metal binding	277	1	Manganese 2 By similarity
	Metal binding	295	1	Manganese 2 By similarity
	Metal binding	354	1	Manganese 1 By similarity
	Metal binding	356	1	Manganese 1 By similarity
	Metal binding	356	1	Manganese 2 By similarity

Sequences

	Sequence		Length	Mass (Da)
	B3ED46-1 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 3FF1B29A68372BB7	FASTA	503	52,760
	10 20 30 40 50 60 MNISVTATPV KKIKTELLVV PFTTGALKKN ADGILQDLGY DAVVLRDFKA DAGELVILYG 70 80 90 100 110 120 AAGKAIAARA ALLGMGEGKK VTDFRKAAAA LALKAMDMKI ESVAVDFSGV KGFASSAKSS 130 140 150 160 170 180 VASICSAFIE GCYTGSYRFD RLKSDKLKKK KDESDKTKEI SELVLRAEPA QLSAVEDGLA 190 200 210 220 230 240 AGIITGSCQN MARDLVNLPG NLLQAEDISA AAVESGKRCG FEVNVFGKEE IEALGMGGLL 250 260 270 280 290 300 AVNRGSQHPP TFTVLDYKPE GKVAKTVALV GKGVTFDSGG ISLKPSEGMG EMKSDMSGAA 310 320 330 340 350 360 SVIGAVEAVA RLGLPIRVIG LIPATDNMPS GSATKPGDVI TTYSGITVEV GNTDAEGRLI 370 380 390 400 410 420 LADALTYAKK QYNPDVIIDL ATLTGACIVA LGYTVAGLFS NDDRLADDIF EAGQITGEKV 430 440 450 460 470 480 WRMPLWEEYD EMIKSDVADV SNLGARGAGS VTASRFLEKF IDGHKKWAHI DIAGPSFSAK 490 500 GAKVSGATGF GVRLLVELLK KWS

References

[1]

"Complete sequence of Chlorobium limicola DSM 245." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Zhao F., Li T., Liu Z. , Overmann J., Bryant D.A., Richardson P. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP001097 Genomic DNA. Translation: ACD90471.1.
RefSeq	YP_001943450.1.
3D structure databases
ModBase	Search...
Protein family/group databases
MEROPS	M17.003.
Genome annotation databases
GeneID	6356182.
GenomeReviews	Gene locus Clim_1411 in contig CP001097_GR.
KEGG	cli:Clim_1411.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	ESACLAV.
Family and domain databases
HAMAP	MF_00181. [Tree]
InterPro	IPR011356. Peptidase_M17. IPR000819. Peptidase_M17_C. IPR008283. Peptidase_M17_N. [Graphical view]
PANTHER	PTHR11963:SF3. Peptidase_M17. 1 hit.
Pfam	PF00883. Peptidase_M17. 1 hit. PF02789. Peptidase_M17_N. 1 hit. [Graphical view]
PRINTS	PR00481. LAMNOPPTDASE.
PROSITE	PS00631. CYTOSOL_AP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

AMPA_CHLL2

Accession

Primary (citable) accession number: B3ED46

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 24, 2009
Last sequence update:	July 22, 2008
Last modified:	November 3, 2009
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)