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B3E0H2

- B3E0H2_METI4

UniProt

B3E0H2 - B3E0H2_METI4

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
cdc9, Minf_2347
Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMINF481448:GJEI-2392-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:cdc9Imported
Ordered Locus Names:Minf_2347Imported
OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
Taxonomic identifieri481448 [NCBI]
Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
ProteomesiUP000009149: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi481448.Minf_2347.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000046158.
KOiK01971.
OMAiPAFVLHE.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

B3E0H2-1 [UniParc]FASTAAdd to Basket

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MSDHIAWKGL NRMPQFVIQE HWARTHHFDL RLEKEGVLKS WALPKGMPVD    50
DEKRLAIQVE DHDLDYGQFE GEIPPGEYGA GKVAIWDKGR YDPVEWTGDK 100
ILFVLHGERL KGRYVLIRLK RSAPDHWLIR KID 133
Length:133
Mass (Da):15,609
Last modified:July 22, 2008 - v1
Checksum:i5C63D3325FB74D36
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000975 Genomic DNA. Translation: ACD84401.1.
RefSeqiYP_001940998.1. NC_010794.1.

Genome annotation databases

EnsemblBacteriaiACD84401; ACD84401; Minf_2347.
GeneIDi6353301.
KEGGimin:Minf_2347.
PATRICi22493961. VBIMetInf111569_2448.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000975 Genomic DNA. Translation: ACD84401.1 .
RefSeqi YP_001940998.1. NC_010794.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 481448.Minf_2347.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD84401 ; ACD84401 ; Minf_2347 .
GeneIDi 6353301.
KEGGi min:Minf_2347.
PATRICi 22493961. VBIMetInf111569_2448.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000046158.
KOi K01971.
OMAi PAFVLHE.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MINF481448:GJEI-2392-MONOMER.

Family and domain databases

InterProi IPR014144. LigD_PE_domain.
[Graphical view ]
Pfami PF13298. LigD_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
    Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
    , Feng L., Wang L., Alam M.
    Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Isolate V4.

Entry informationi

Entry nameiB3E0H2_METI4
AccessioniPrimary (citable) accession number: B3E0H2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: May 14, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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