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B3E0H2

- B3E0H2_METI4

UniProt

B3E0H2 - B3E0H2_METI4

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

cdc9

Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
  1. Functioni

    GO - Molecular functioni

    1. ligase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMINF481448:GJEI-2392-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:cdc9Imported
    Ordered Locus Names:Minf_2347Imported
    OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
    Taxonomic identifieri481448 [NCBI]
    Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
    ProteomesiUP000009149: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi481448.Minf_2347.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000046158.
    KOiK01971.
    OMAiPAFVLHE.
    OrthoDBiEOG661H49.

    Family and domain databases

    InterProiIPR014144. LigD_PE_domain.
    [Graphical view]
    PfamiPF13298. LigD_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B3E0H2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDHIAWKGL NRMPQFVIQE HWARTHHFDL RLEKEGVLKS WALPKGMPVD    50
    DEKRLAIQVE DHDLDYGQFE GEIPPGEYGA GKVAIWDKGR YDPVEWTGDK 100
    ILFVLHGERL KGRYVLIRLK RSAPDHWLIR KID 133
    Length:133
    Mass (Da):15,609
    Last modified:July 22, 2008 - v1
    Checksum:i5C63D3325FB74D36
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000975 Genomic DNA. Translation: ACD84401.1.
    RefSeqiYP_001940998.1. NC_010794.1.

    Genome annotation databases

    EnsemblBacteriaiACD84401; ACD84401; Minf_2347.
    GeneIDi6353301.
    KEGGimin:Minf_2347.
    PATRICi22493961. VBIMetInf111569_2448.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000975 Genomic DNA. Translation: ACD84401.1 .
    RefSeqi YP_001940998.1. NC_010794.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 481448.Minf_2347.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD84401 ; ACD84401 ; Minf_2347 .
    GeneIDi 6353301.
    KEGGi min:Minf_2347.
    PATRICi 22493961. VBIMetInf111569_2448.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000046158.
    KOi K01971.
    OMAi PAFVLHE.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MINF481448:GJEI-2392-MONOMER.

    Family and domain databases

    InterProi IPR014144. LigD_PE_domain.
    [Graphical view ]
    Pfami PF13298. LigD_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
      Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
      , Feng L., Wang L., Alam M.
      Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Isolate V4Imported.

    Entry informationi

    Entry nameiB3E0H2_METI4
    AccessioniPrimary (citable) accession number: B3E0H2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 22, 2008
    Last sequence update: July 22, 2008
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3