Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase

Gene

cdc9

Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:cdc9Imported
Ordered Locus Names:Minf_2347Imported
OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
Taxonomic identifieri481448 [NCBI]
Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
Proteomesi
  • UP000009149 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi481448.Minf_2347.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini19 – 117LigD_NInterPro annotationAdd BLAST99

Phylogenomic databases

eggNOGiENOG4107VCD. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000046158.
OMAiHASHLHW.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

B3E0H2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDHIAWKGL NRMPQFVIQE HWARTHHFDL RLEKEGVLKS WALPKGMPVD
60 70 80 90 100
DEKRLAIQVE DHDLDYGQFE GEIPPGEYGA GKVAIWDKGR YDPVEWTGDK
110 120 130
ILFVLHGERL KGRYVLIRLK RSAPDHWLIR KID
Length:133
Mass (Da):15,609
Last modified:July 22, 2008 - v1
Checksum:i5C63D3325FB74D36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000975 Genomic DNA. Translation: ACD84401.1.

Genome annotation databases

EnsemblBacteriaiACD84401; ACD84401; Minf_2347.
KEGGimin:Minf_2347.
PATRICi22493961. VBIMetInf111569_2448.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000975 Genomic DNA. Translation: ACD84401.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi481448.Minf_2347.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD84401; ACD84401; Minf_2347.
KEGGimin:Minf_2347.
PATRICi22493961. VBIMetInf111569_2448.

Phylogenomic databases

eggNOGiENOG4107VCD. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000046158.
OMAiHASHLHW.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB3E0H2_METI4
AccessioniPrimary (citable) accession number: B3E0H2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: November 2, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.