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B3DX22 (B3DX22_METI4) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length437 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B3DX22 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 78994EDDE719411A

FASTA43749,940
        10         20         30         40         50         60 
MVEAVPKYRL PQKGMPPEVA AQLIRDELML EGNPRLNLAT FVTTWMEKEA RELIAETYDK 

        70         80         90        100        110        120 
NLIDKDEYPK TAEIEKRCVR MIARLFHGSD NEKPVGTSTV GSSEAIMLAG LAMKWNWKKR 

       130        140        150        160        170        180 
QKNSGRSFDK PNLVMGTNVQ VVWEKFCRYF EVEPRFIPVV AGSYVTNPEK VASYLDDNTI 

       190        200        210        220        230        240 
GVVAILGTTY SGEFEPIEQI HEAIKDFCLT RGMKIPLHID AASGGFVAPF IHPELKWDFQ 

       250        260        270        280        290        300 
LPLVESINVS GHKYGLVYPG VGWAIWRTES SLPEELIFKV NYLGGELPTF SLNFSRPGSQ 

       310        320        330        340        350        360 
VIAQYYNFLR LGEEGYIQIL KSMQSISLHL AEKIESLRIF EMISRGKDIP VICFELKAEE 

       370        380        390        400        410        420 
PFSVFDLSHR LREKGWQVPA YFMPPEAQNT AVMRIVIREG FSRDMADVLF HDIKTAVEEL 

       430 
RTHTLSRQPR KSLRFIH 

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References

[1]"Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F. expand/collapse author list , Feng L., Wang L., Alam M.
Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Isolate V4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000975 Genomic DNA. Translation: ACD82162.1.
RefSeqYP_001938761.1. NC_010794.1.

3D structure databases

ProteinModelPortalB3DX22.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING481448.Minf_0102.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD82162; ACD82162; Minf_0102.
GeneID6351017.
KEGGmin:Minf_0102.
PATRIC22489187. VBIMetInf111569_0104.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAERQTGID.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycMINF481448:GJEI-107-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB3DX22_METI4
AccessionPrimary (citable) accession number: B3DX22
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: November 13, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)