ID   B3DWH3_METI4            Unreviewed;       366 AA.
AC   B3DWH3;
DT   22-JUL-2008, integrated into UniProtKB/TrEMBL.
DT   22-JUL-2008, sequence version 1.
DT   27-MAR-2024, entry version 70.
DE   SubName: Full=ATP-dependent DNA ligase {ECO:0000313|EMBL:ACD82068.1};
GN   OrderedLocusNames=Minf_0008 {ECO:0000313|EMBL:ACD82068.1};
OS   Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain
OS   V4)).
OC   Bacteria; Verrucomicrobiota; Methylacidiphilae; Methylacidiphilales;
OC   Methylacidiphilaceae; Methylacidiphilum (ex Ratnadevi et al. 2023).
OX   NCBI_TaxID=481448 {ECO:0000313|EMBL:ACD82068.1, ECO:0000313|Proteomes:UP000009149};
RN   [1] {ECO:0000313|EMBL:ACD82068.1, ECO:0000313|Proteomes:UP000009149}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate V4 {ECO:0000313|Proteomes:UP000009149};
RX   PubMed=18593465; DOI=10.1186/1745-6150-3-26;
RA   Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y.,
RA   Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V.,
RA   Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.,
RA   Feng L., Wang L., Alam M.;
RT   "Complete genome sequence of the extremely acidophilic methanotroph isolate
RT   V4, Methylacidiphilum infernorum, a representative of the bacterial phylum
RT   Verrucomicrobia.";
RL   Biol. Direct 3:26-26(2008).
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DR   EMBL; CP000975; ACD82068.1; -; Genomic_DNA.
DR   RefSeq; WP_012462350.1; NC_010794.1.
DR   AlphaFoldDB; B3DWH3; -.
DR   STRING; 481448.Minf_0008; -.
DR   KEGG; min:Minf_0008; -.
DR   eggNOG; COG1423; Bacteria.
DR   HOGENOM; CLU_061502_0_0_0; -.
DR   OrthoDB; 245177at2; -.
DR   Proteomes; UP000009149; Chromosome.
DR   GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR   CDD; cd07894; Adenylation_RNA_ligase; 1.
DR   Gene3D; 3.10.450.740; -; 1.
DR   Gene3D; 3.30.1490.70; -; 1.
DR   Gene3D; 3.30.70.2160; -; 1.
DR   Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR   InterPro; IPR041596; Lig_Pab1020_C.
DR   InterPro; IPR021122; RNA_ligase_dom_REL/Rnl2.
DR   InterPro; IPR001072; RNA_ligase_Pab1020.
DR   NCBIfam; TIGR01209; RNA ligase; 1.
DR   Pfam; PF18330; Lig_C; 1.
DR   Pfam; PF09414; RNA_ligase; 1.
DR   PRINTS; PR01048; Y414FAMILY.
DR   SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
PE   4: Predicted;
KW   Ligase {ECO:0000313|EMBL:ACD82068.1}.
FT   DOMAIN          71..226
FT                   /note="RNA ligase"
FT                   /evidence="ECO:0000259|Pfam:PF09414"
FT   DOMAIN          242..361
FT                   /note="RNA ligase Pab1020 C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF18330"
SQ   SEQUENCE   366 AA;  42508 MW;  0AA4C48C7B367330 CRC64;
     MYEQLIEEIL QSKKGQLGRF WEYSYVRLTH AYKGWPEGTV FLKDLAIAGF PKIGRINSLE
     PGLREQFPSS FWMEEKVDGY NVRIFQYKGK ILCATRGGFL CPFSTDRIGE LMPLGIFNDH
     PSLVLCGEIA GPDNPYIEGP SPLVQEDIKL FIFDIAQLPT LEFLPQRQKQ ELICRYGLPS
     VKNFGLFKNN GNDLVEIKKI LLCLHNEYRE GAVFKEEPFG RYAKYVTAHS DLNDIAVLSH
     KIMDISPNYF IDRILRYVLF LIDMGIIEEN GWDEKLGKAF ISSIKEVLKR VKEGGKSSRL
     FRCRFRNPQN AQYLIDHLKH IPGHQEHVIV KKFYKDKDYW YLEFEKIFPA TGDSLRNWLS
     GALRFD
//