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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Minf_0008

Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMINF481448:GJEI-8-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Minf_0008Imported
OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
Taxonomic identifieri481448 [NCBI]
Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
ProteomesiUP000009149: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi481448.Minf_0008.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiGYPHIGR.
OrthoDBiEOG6XHC4G.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

B3DWH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYEQLIEEIL QSKKGQLGRF WEYSYVRLTH AYKGWPEGTV FLKDLAIAGF
60 70 80 90 100
PKIGRINSLE PGLREQFPSS FWMEEKVDGY NVRIFQYKGK ILCATRGGFL
110 120 130 140 150
CPFSTDRIGE LMPLGIFNDH PSLVLCGEIA GPDNPYIEGP SPLVQEDIKL
160 170 180 190 200
FIFDIAQLPT LEFLPQRQKQ ELICRYGLPS VKNFGLFKNN GNDLVEIKKI
210 220 230 240 250
LLCLHNEYRE GAVFKEEPFG RYAKYVTAHS DLNDIAVLSH KIMDISPNYF
260 270 280 290 300
IDRILRYVLF LIDMGIIEEN GWDEKLGKAF ISSIKEVLKR VKEGGKSSRL
310 320 330 340 350
FRCRFRNPQN AQYLIDHLKH IPGHQEHVIV KKFYKDKDYW YLEFEKIFPA
360
TGDSLRNWLS GALRFD
Length:366
Mass (Da):42,508
Last modified:July 22, 2008 - v1
Checksum:i0AA4C48C7B367330
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000975 Genomic DNA. Translation: ACD82068.1.
RefSeqiYP_001938667.1. NC_010794.1.

Genome annotation databases

EnsemblBacteriaiACD82068; ACD82068; Minf_0008.
GeneIDi6350918.
KEGGimin:Minf_0008.
PATRICi22488985. VBIMetInf111569_0008.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000975 Genomic DNA. Translation: ACD82068.1.
RefSeqiYP_001938667.1. NC_010794.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi481448.Minf_0008.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD82068; ACD82068; Minf_0008.
GeneIDi6350918.
KEGGimin:Minf_0008.
PATRICi22488985. VBIMetInf111569_0008.

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiGYPHIGR.
OrthoDBiEOG6XHC4G.

Enzyme and pathway databases

BioCyciMINF481448:GJEI-8-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
    Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
    , Feng L., Wang L., Alam M.
    Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Isolate V4Imported.

Entry informationi

Entry nameiB3DWH3_METI4
AccessioniPrimary (citable) accession number: B3DWH3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: January 7, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.