B3DWH3 (B3DWH3_METI4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ACD82068.1

Gene names

Ordered Locus Names:

Minf_0008

Organism

Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4)) [Complete proteome] [HAMAP]

Taxonomic identifier

481448 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Chlamydiae/Verrucomicrobia group › Verrucomicrobia › unclassified Verrucomicrobia › Methylacidiphilales › Methylacidiphilaceae › Methylacidiphilum › Methylacidiphilum infernorum

Protein attributes

Sequence length	366 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACD82068.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3DWH3 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 0AA4C48C7B367330	FASTA	366	42,508
	10 20 30 40 50 60 MYEQLIEEIL QSKKGQLGRF WEYSYVRLTH AYKGWPEGTV FLKDLAIAGF PKIGRINSLE 70 80 90 100 110 120 PGLREQFPSS FWMEEKVDGY NVRIFQYKGK ILCATRGGFL CPFSTDRIGE LMPLGIFNDH 130 140 150 160 170 180 PSLVLCGEIA GPDNPYIEGP SPLVQEDIKL FIFDIAQLPT LEFLPQRQKQ ELICRYGLPS 190 200 210 220 230 240 VKNFGLFKNN GNDLVEIKKI LLCLHNEYRE GAVFKEEPFG RYAKYVTAHS DLNDIAVLSH 250 260 270 280 290 300 KIMDISPNYF IDRILRYVLF LIDMGIIEEN GWDEKLGKAF ISSIKEVLKR VKEGGKSSRL 310 320 330 340 350 360 FRCRFRNPQN AQYLIDHLKH IPGHQEHVIV KKFYKDKDYW YLEFEKIFPA TGDSLRNWLS GALRFD

References

[1]

"Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia." Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F. , Feng L., Wang L., Alam M. Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Isolate V4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000975 Genomic DNA. Translation: ACD82068.1.
RefSeq	YP_001938667.1. NC_010794.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	481448.Minf_0008.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACD82068; ACD82068; Minf_0008.
GeneID	6350918.
KEGG	min:Minf_0008.
PATRIC	22488985. VBIMetInf111569_0008.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1423.
HOGENOM	HOG000224394.
KO	K07468.
OMA	GYPHIGR.
ProtClustDB	CLSK862643.
Enzyme and pathway databases
BioCyc	MINF481448:GJEI-8-MONOMER.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR001072. Uncharacterised_MJ0414. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
PRINTS	PR01048. Y414FAMILY.
TIGRFAMs	TIGR01209. TIGR01209. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3DWH3_METI4

Accession

Primary (citable) accession number: B3DWH3

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)