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B3DWH3

- B3DWH3_METI4

UniProt

B3DWH3 - B3DWH3_METI4

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Minf_0008

Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (22 Jul 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMINF481448:GJEI-8-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Minf_0008Imported
    OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
    Taxonomic identifieri481448 [NCBI]
    Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
    ProteomesiUP000009149: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi481448.Minf_0008.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1423.
    HOGENOMiHOG000224394.
    KOiK07468.
    OMAiCGEIAGP.
    OrthoDBiEOG6XHC4G.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    PRINTSiPR01048. Y414FAMILY.
    TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B3DWH3-1 [UniParc]FASTAAdd to Basket

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    MYEQLIEEIL QSKKGQLGRF WEYSYVRLTH AYKGWPEGTV FLKDLAIAGF    50
    PKIGRINSLE PGLREQFPSS FWMEEKVDGY NVRIFQYKGK ILCATRGGFL 100
    CPFSTDRIGE LMPLGIFNDH PSLVLCGEIA GPDNPYIEGP SPLVQEDIKL 150
    FIFDIAQLPT LEFLPQRQKQ ELICRYGLPS VKNFGLFKNN GNDLVEIKKI 200
    LLCLHNEYRE GAVFKEEPFG RYAKYVTAHS DLNDIAVLSH KIMDISPNYF 250
    IDRILRYVLF LIDMGIIEEN GWDEKLGKAF ISSIKEVLKR VKEGGKSSRL 300
    FRCRFRNPQN AQYLIDHLKH IPGHQEHVIV KKFYKDKDYW YLEFEKIFPA 350
    TGDSLRNWLS GALRFD 366
    Length:366
    Mass (Da):42,508
    Last modified:July 22, 2008 - v1
    Checksum:i0AA4C48C7B367330
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000975 Genomic DNA. Translation: ACD82068.1.
    RefSeqiYP_001938667.1. NC_010794.1.

    Genome annotation databases

    EnsemblBacteriaiACD82068; ACD82068; Minf_0008.
    GeneIDi6350918.
    KEGGimin:Minf_0008.
    PATRICi22488985. VBIMetInf111569_0008.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000975 Genomic DNA. Translation: ACD82068.1 .
    RefSeqi YP_001938667.1. NC_010794.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 481448.Minf_0008.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD82068 ; ACD82068 ; Minf_0008 .
    GeneIDi 6350918.
    KEGGi min:Minf_0008.
    PATRICi 22488985. VBIMetInf111569_0008.

    Phylogenomic databases

    eggNOGi COG1423.
    HOGENOMi HOG000224394.
    KOi K07468.
    OMAi CGEIAGP.
    OrthoDBi EOG6XHC4G.

    Enzyme and pathway databases

    BioCyci MINF481448:GJEI-8-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    PRINTSi PR01048. Y414FAMILY.
    TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
      Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
      , Feng L., Wang L., Alam M.
      Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Isolate V4Imported.

    Entry informationi

    Entry nameiB3DWH3_METI4
    AccessioniPrimary (citable) accession number: B3DWH3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 22, 2008
    Last sequence update: July 22, 2008
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3