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B3DWH3 (B3DWH3_METI4) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length366 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACD82068.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B3DWH3 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 0AA4C48C7B367330

FASTA36642,508
        10         20         30         40         50         60 
MYEQLIEEIL QSKKGQLGRF WEYSYVRLTH AYKGWPEGTV FLKDLAIAGF PKIGRINSLE 

        70         80         90        100        110        120 
PGLREQFPSS FWMEEKVDGY NVRIFQYKGK ILCATRGGFL CPFSTDRIGE LMPLGIFNDH 

       130        140        150        160        170        180 
PSLVLCGEIA GPDNPYIEGP SPLVQEDIKL FIFDIAQLPT LEFLPQRQKQ ELICRYGLPS 

       190        200        210        220        230        240 
VKNFGLFKNN GNDLVEIKKI LLCLHNEYRE GAVFKEEPFG RYAKYVTAHS DLNDIAVLSH 

       250        260        270        280        290        300 
KIMDISPNYF IDRILRYVLF LIDMGIIEEN GWDEKLGKAF ISSIKEVLKR VKEGGKSSRL 

       310        320        330        340        350        360 
FRCRFRNPQN AQYLIDHLKH IPGHQEHVIV KKFYKDKDYW YLEFEKIFPA TGDSLRNWLS 


GALRFD 

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References

[1]"Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F. expand/collapse author list , Feng L., Wang L., Alam M.
Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Isolate V4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000975 Genomic DNA. Translation: ACD82068.1.
RefSeqYP_001938667.1. NC_010794.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING481448.Minf_0008.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD82068; ACD82068; Minf_0008.
GeneID6350918.
KEGGmin:Minf_0008.
PATRIC22488985. VBIMetInf111569_0008.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1423.
HOGENOMHOG000224394.
KOK07468.
OMAGYPHIGR.
OrthoDBEOG6XHC4G.
ProtClustDBCLSK862643.

Enzyme and pathway databases

BioCycMINF481448:GJEI-8-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB3DWH3_METI4
AccessionPrimary (citable) accession number: B3DWH3
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)