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B3DWH3

- B3DWH3_METI4

UniProt

B3DWH3 - B3DWH3_METI4

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
Minf_0008
Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMINF481448:GJEI-8-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Minf_0008Imported
OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
Taxonomic identifieri481448 [NCBI]
Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
ProteomesiUP000009149: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi481448.Minf_0008.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiCGEIAGP.
OrthoDBiEOG6XHC4G.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

B3DWH3-1 [UniParc]FASTAAdd to Basket

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MYEQLIEEIL QSKKGQLGRF WEYSYVRLTH AYKGWPEGTV FLKDLAIAGF    50
PKIGRINSLE PGLREQFPSS FWMEEKVDGY NVRIFQYKGK ILCATRGGFL 100
CPFSTDRIGE LMPLGIFNDH PSLVLCGEIA GPDNPYIEGP SPLVQEDIKL 150
FIFDIAQLPT LEFLPQRQKQ ELICRYGLPS VKNFGLFKNN GNDLVEIKKI 200
LLCLHNEYRE GAVFKEEPFG RYAKYVTAHS DLNDIAVLSH KIMDISPNYF 250
IDRILRYVLF LIDMGIIEEN GWDEKLGKAF ISSIKEVLKR VKEGGKSSRL 300
FRCRFRNPQN AQYLIDHLKH IPGHQEHVIV KKFYKDKDYW YLEFEKIFPA 350
TGDSLRNWLS GALRFD 366
Length:366
Mass (Da):42,508
Last modified:July 22, 2008 - v1
Checksum:i0AA4C48C7B367330
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000975 Genomic DNA. Translation: ACD82068.1.
RefSeqiYP_001938667.1. NC_010794.1.

Genome annotation databases

EnsemblBacteriaiACD82068; ACD82068; Minf_0008.
GeneIDi6350918.
KEGGimin:Minf_0008.
PATRICi22488985. VBIMetInf111569_0008.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000975 Genomic DNA. Translation: ACD82068.1 .
RefSeqi YP_001938667.1. NC_010794.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 481448.Minf_0008.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD82068 ; ACD82068 ; Minf_0008 .
GeneIDi 6350918.
KEGGi min:Minf_0008.
PATRICi 22488985. VBIMetInf111569_0008.

Phylogenomic databases

eggNOGi COG1423.
HOGENOMi HOG000224394.
KOi K07468.
OMAi CGEIAGP.
OrthoDBi EOG6XHC4G.

Enzyme and pathway databases

BioCyci MINF481448:GJEI-8-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
PRINTSi PR01048. Y414FAMILY.
TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
    Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
    , Feng L., Wang L., Alam M.
    Biol. Direct 3:26-26(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Isolate V4.

Entry informationi

Entry nameiB3DWH3_METI4
AccessioniPrimary (citable) accession number: B3DWH3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: May 14, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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