B3DUK6 (B3DUK6_METI4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase EMBL ACD83009.1

Gene names

Name:	kdsA EMBL ACD83009.1
Ordered Locus Names:	Minf_0954

Organism

Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4)) [Complete proteome] [HAMAP]

Taxonomic identifier

481448 [NCBI]

Taxonomic lineage

Bacteria › Verrucomicrobia › unclassified Verrucomicrobia › Methylacidiphilales › Methylacidiphilaceae › Methylacidiphilum

Protein attributes

Sequence length	261 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. SAAS SAAS006269
Pathway	Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. SAAS SAAS006269 Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. SAAS SAAS006269
Subcellular location	Cytoplasm By similarity SAAS SAAS006269.

Ontologies

Keywords
Biological process	Lipopolysaccharide biosynthesis SAAS SAAS006269
Cellular component	Cytoplasm SAAS SAAS006269
Molecular function	Transferase SAAS SAAS006269
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lipopolysaccharide biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3DUK6 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 3C423E410263DDAC	FASTA	261	28,773
	10 20 30 40 50 60 MNIKKPFFLI AGPCVIESLE LVIDIALELK KITSKHQIPF YFKSSFDKAN RSSIDSFRGP 70 80 90 100 110 120 GLKEGLRILT KIKEKTGCAL TTDVHSADQV KPVAQVVDLV QIPAFLCRQT DLILACGESG 130 140 150 160 170 180 KAVNVKKGQF LAPEDVDLIA EKLKRVGCHH YFFTERGSCF GYHDLIVDMR AIYLMRSRQH 190 200 210 220 230 240 KVIFDATHSV QRPSALGRVT GGDSSLAFPL ARAAVAVGID GLFFETHPCP ENALSDSSTM 250 260 IPLDKVDPML ECLLKIHEAT S

References

[1]

"Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia." Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F. , Feng L., Wang L., Alam M. Biol. Direct 3:26-26(2008) [PubMed: 18593465] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Isolate V4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000975 Genomic DNA. Translation: ACD83009.1.
RefSeq	YP_001939607.1. NC_010794.1.
3D structure databases
ProteinModelPortal	B3DUK6.
ModBase	Search...
Protein-protein interaction databases
STRING	B3DUK6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6351885.
GenomeReviews	Gene locus Minf_0954 in contig CP000975_GR.
KEGG	min:Minf_0954.
PATRIC	22491043. VBIMetInf111569_1011.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG575990.
OMA	CVIESLE.
ProtClustDB	PRK05198.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01627.
PANTHER	PTHR21057:SF2. KDO8P_synthase. 1 hit.
Pfam	PF00793. DAHP_synth_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR01362. KDO8P_synth. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3DUK6_METI4

Accession

Primary (citable) accession number: B3DUK6

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)