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B3DTI0 (B3DTI0_BIFLD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Arabinogalactan endo-1,4-beta-galactosidase EMBL ACD98449.1
Gene names
Ordered Locus Names:BLD_1003
OrganismBifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP]
Taxonomic identifier205913 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length897 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncation binding

Inferred from electronic annotation. Source: InterPro

glucosidase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B3DTI0 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: DC5BBEC6127241DE

FASTA89793,939
        10         20         30         40         50         60 
MRRNTALTRI MASGVAAIML CAGGTFTVNA AEEEPVKADV SVKAIQGLSD DFIGGMDVSS 

        70         80         90        100        110        120 
MLSLEESGVT FKNANGEVED LFTLLKESGV NYVRLRVWND PFTADGQGYG GGNVNADRAL 

       130        140        150        160        170        180 
TMAKRATAAG LKVLVDFHYS DFWADPSKQQ VPKAWKSFEG DADKTADTVY DYTKQTLTTF 

       190        200        210        220        230        240 
KQAGVDVGMV QVGNETTAKI AGISGWDGMS KVFSAGSKAI REVLPEAKVV IHFTNPEKAG 

       250        260        270        280        290        300 
TYATYAKQLS NHNVDYDVFA SSYYPFWHGT TENLTSVLKN VASTYKKDVM VAETSWAYTL 

       310        320        330        340        350        360 
DDGDDDSNTV PSKVTADNLK KYDISPQGQA DEIRAVAEAV NNIGDNDGDG ENDGLGVFYW 

       370        380        390        400        410        420 
EPAWVPVGTG GKDNAELVDT WNKYGGGWAT EAAGEYDPND AGLYWGGSGV DNQALFDFDG 

       430        440        450        460        470        480 
KALASLPTFK YIHTGAVTDH VFTKIDPVEI TATDSDSIDA IKAQLPSEVA AHYQDGVDET 

       490        500        510        520        530        540 
ETVTWQSAAL DWIRGAGTYT ITGTTNAGHD VTVAVTVTAT PAKDYVTDGS FENAENDKNW 

       550        560        570        580        590        600 
TIAGTGASIT EDSGNAADGK RALKFWASDA YSFSATQTIT GLEPGEYVLT AMSQGAAADN 

       610        620        630        640        650        660 
AAITDGVALS ATTGGKTTSD ALELNGWVKF DTATVPVTVG ADGTATITIT GNLPADAWGN 

       670        680        690        700        710        720 
VDKVSLVKKT ETPVKPSTEN LDKAVAEAGK INRDEYTNES LAKLDQALAA ADVLLAGSTY 

       730        740        750        760        770        780 
TEQDVNDVIK LVADAIAGLA QKEVSSLTVT PSKTTYQVGD AIDADHDLKV VGNYSAGMGN 

       790        800        810        820        830        840 
VTLSADQFTL DYDFSAPADA AKVTVTLKSN PNVTETYTVA VTARAEGGSG NGSDGAGNGG 

       850        860        870        880        890 
ATINPDTGEG DKTNGANGDK ITGVLSNTGS AVTAVGLAVV VLGVAGGVSL ALRRKRS

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References

[1]"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth."
Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J.
BMC Genomics 9:247-247(2008) [PubMed: 18505588] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000605 Genomic DNA. Translation: ACD98449.1.
RefSeqYP_001954947.1. NC_010816.1.

3D structure databases

ProteinModelPortalB3DTI0.
ModBaseSearch...

Protein-protein interaction databases

STRINGB3DTI0.

Protein family/group databases

CAZyGH53. Glycoside Hydrolase Family 53.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6363667.
GenomeReviewsGene locus BLD_1003 in contig CP000605_GR.
KEGGblj:BLD_1003.
PATRIC21114962. VBIBifLon134794_1019.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG351569.
OMAMVAETSW.
ProtClustDBCLSK382600.

Family and domain databases

InterProIPR011080. Big_3.
IPR011081. Big_4.
IPR011683. Glyco_hydro_53.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK01224.
PfamPF07523. Big_3. 1 hit.
PF07532. Big_4. 1 hit.
PF07745. Glyco_hydro_53. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB3DTI0_BIFLD
AccessionPrimary (citable) accession number: B3DTI0
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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